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263
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Prediction of altrered metabolites from altered gene expression
Gene Metabolites
11 months ago by english.server ▴ 290
0
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0
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696
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Comment: Comment: Order of Normalization/Surrogate variable analysis(or even known batch correctio
21 months ago by english.server ▴ 290
1
vote
2
replies
696
views
Order of Normalization/Surrogate variable analysis(or even known batch correction)/QC
Normalization Batch QC correction effect
21 months ago by english.server ▴ 290
0
votes
0
replies
297
views
How to calculate/visualize network robustness/vulnerability?
Erdos-Renyi Barabasi-Albert igraph
2.0 years ago by english.server ▴ 290
4
votes
1
reply
512
views
Cancer-cell-line-specific essential genes
genes database essential
updated 2.0 years ago by 87k • written 2.0 years ago by ▴ 290
3
votes
1
reply
428
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Disease-specific SNPs. Any databases?
SNP database
updated 2.1 years ago by 87k • written 2.1 years ago by ▴ 290
0
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0
replies
415
views
Lasso for survival analysis: Expression dichotomization necessary or not?
Dichotomization Lasso survival
2.4 years ago by english.server ▴ 290
1
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1
reply
905
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Comment: Comment: 3d structure without PDB
2.8 years ago by english.server ▴ 290
1
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0
replies
387
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Comparing distribution of microarray data to that of RNA-seq data
distribution
2.8 years ago by english.server ▴ 290
0
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1
reply
905
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Answer: Answer: 3d structure without PDB
2.8 years ago by english.server ▴ 290
1
vote
1
reply
876
views
Correcting for batch effect in survival data
batch effect survival
updated 3.0 years ago by 87k • written 3.0 years ago by ▴ 290
1
vote
0
replies
859
views
TCGA methylation data analysis. beta values to differentially regulated CpGs
methylation beta values DMP
3.2 years ago by english.server ▴ 290
1
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1
reply
3.5k
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Comparing two different COX models in R
survival classification coxph
3.3 years ago by english.server ▴ 290
0
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0
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481
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How to find (all) transcripion factors of a certin cell type/tissue?
transciption factor database
3.3 years ago by english.server ▴ 290
0
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0
replies
1.1k
views
Comment: C: Clustering/Hetamap of count RNAseq data
3.4 years ago by english.server ▴ 290
4
votes
3
replies
1.1k
views
Clustering/Hetamap of count RNAseq data
RNA-Seq Normalization
updated 3.4 years ago by 82k • written 3.4 years ago by ▴ 290
1
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0
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1.1k
views
Comment: C: Clustering/Hetamap of count RNAseq data
3.4 years ago by english.server ▴ 290
0
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1
reply
9.3k
views
Comment: C: Predicting survival of cancer patients using glmnet cox
3.4 years ago by english.server ▴ 290
1
vote
0
replies
906
views
Comment: C: Identify small strings in a larger sequence in R
3.4 years ago by english.server ▴ 290
0
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1
reply
9.3k
views
Comment: C: Predicting survival of cancer patients using glmnet cox
3.4 years ago by english.server ▴ 290
0
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0
replies
953
views
Comment: C: P-value adjustment for diffreent classes each tested individually
3.5 years ago by english.server ▴ 290
1
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2
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953
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P-value adjustment for diffreent classes each tested individually
survival p-value adjustment
3.5 years ago by english.server ▴ 290
0
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0
replies
1.9k
views
Comment: C: Hazard ratio for many genes (gene signature)
3.7 years ago by english.server ▴ 290
0
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0
replies
1.9k
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Comment: C: Hazard ratio for many genes (gene signature)
3.7 years ago by english.server ▴ 290
0
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2
replies
1.9k
views
Comment: C: Hazard ratio for many genes (gene signature)
3.7 years ago by english.server ▴ 290
0
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2
replies
1.9k
views
Comment: C: Hazard ratio for many genes (gene signature)
3.7 years ago by english.server ▴ 290
7
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9
replies
1.9k
views
Hazard ratio for many genes (gene signature)
survival analysis R
3.7 years ago by english.server ▴ 290
0
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1
reply
1.2k
views
Comment: C: Inconsistent survival times in TCGA clinicalMatrix file?
3.8 years ago by english.server ▴ 290
2
votes
3
replies
1.2k
views
Inconsistent survival times in TCGA clinicalMatrix file?
survival analysis TCGA data
updated 3.8 years ago by 87k • written 3.8 years ago by ▴ 290
0
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1
reply
1.1k
views
Comment: C: Too many RNAseq samples. What to do?
3.8 years ago by english.server ▴ 290
5
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6
replies
1.1k
views
Too many RNAseq samples. What to do?
RNA-Seq deseq2 edger
3.8 years ago by english.server ▴ 290
0
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0
replies
1.1k
views
Comment: C: Too many RNAseq samples. What to do?
3.8 years ago by english.server ▴ 290
0
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0
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3.6k
views
Comment: C: Differential gene expression, starting from RSEM expected count values.
4.2 years ago by english.server ▴ 290
9
votes
5
replies
3.6k
views
Differential gene expression, starting from RSEM expected count values.
rsem expected-count deseq2
updated 4.2 years ago by 19k • written 4.2 years ago by ▴ 290
1
vote
0
replies
1.3k
views
Comment: C: Survival analysis: Why to categorize age?
4.3 years ago by english.server ▴ 290
0
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1
reply
1.3k
views
Comment: C: Survival analysis: Why to categorize age?
4.3 years ago by english.server ▴ 290
2
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1
reply
1.3k
views
Comment: C: Survival analysis: Why to categorize age?
4.3 years ago by english.server ▴ 290
0
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1
reply
1.3k
views
Comment: C: Survival analysis: Why to categorize age?
4.3 years ago by english.server ▴ 290
14
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9
replies
1.3k
views
Survival analysis: Why to categorize age?
survival
updated 4.3 years ago by 87k • written 4.3 years ago by ▴ 290
0
votes
0
replies
998
views
Comment: C: DEG, wilcoxon, p value adjustment
4.3 years ago by english.server ▴ 290
2
votes
2
replies
998
views
DEG, wilcoxon, p value adjustment
RNA-Seq
4.3 years ago by english.server ▴ 290
0
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0
replies
3.6k
views
Comment: C: Tophat's Mean Inner Distance between Mate Pairs
updated 4.5 years ago by 43k • written 8.6 years ago by ▴ 290
0
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0
replies
1.2k
views
Comment: C: Removing certain levels of Batch before batch effect correction
4.6 years ago by english.server ▴ 290
0
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1
reply
1.2k
views
Comment: C: Removing certain levels of Batch before batch effect correction
4.6 years ago by english.server ▴ 290
5
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6
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1.2k
views
Removing certain levels of Batch before batch effect correction
batch management diferential expression
4.6 years ago by english.server ▴ 290
0
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1
reply
1.2k
views
Comment: C: Batch removal VS batch effect correction
4.6 years ago by english.server ▴ 290
0
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0
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1.7k
views
Comment: C: miRanda Match score and Free energy cut-offs
4.7 years ago by english.server ▴ 290
2
votes
2
replies
2.9k
views
Are the values in geo .soft files log2 transformed or normalized?
geo .soft files
updated 4.7 years ago by 20 • written 8.5 years ago by ▴ 290
0
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0
replies
1.3k
views
Comment: C: Robust rank aggregation with imprecise p values
4.7 years ago by english.server ▴ 290
0
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1
reply
1.3k
views
Comment: C: Robust rank aggregation with imprecise p values
4.7 years ago by english.server ▴ 290
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