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19
votes
11
replies
14k
views
10 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 19 days ago by ★ 3.8k • written 10.8 years ago by ▴ 920
0
votes
0
replies
404
views
Any tool that can give me a list of DNA/RNA aptamers against specific protein as the in vitro SELEX library to screen the sequences?
aptamer protein SELEX
11 weeks ago by J.F.Jiang ▴ 920
0
votes
1
reply
514
views
tumor fraction estimation and fragment size plot using sWGS data
ctDNA NGS WGS
updated 6 months ago by 43k • written 18 months ago by ▴ 920
0
votes
0
replies
610
views
Comment: Comment: BCR/TCR analysis using target capture sequencing data
11 months ago by J.F.Jiang ▴ 920
0
votes
2
replies
610
views
BCR/TCR analysis using target capture sequencing data
capture ngs TCR BCR
11 months ago by J.F.Jiang ▴ 920
0
votes
1
reply
985
views
Comment: Comment: combine/merge closet variants into one from mutect2
12 months ago by J.F.Jiang ▴ 920
0
votes
1
reply
985
views
Comment: Comment: combine/merge closet variants into one from mutect2
12 months ago by J.F.Jiang ▴ 920
0
votes
5
replies
985
views
combine/merge closet variants into one from mutect2
variants mutect2 merge gatk
updated 12 months ago by 100k • written 12 months ago by ▴ 920
0
votes
1
reply
731
views
Comment: Comment: BCL2 fusions not detected in RNA level
12 months ago by J.F.Jiang ▴ 920
0
votes
4
replies
731
views
BCL2 fusions not detected in RNA level
fusion RNA BCL2
updated 12 months ago by 82k • written 12 months ago by ▴ 920
0
votes
0
replies
414
views
multiplex pcr PRIMER
sequence primer multiplex pcr
14 months ago by J.F.Jiang ▴ 920
0
votes
0
replies
329
views
heterozygosity control from NGS data
heterozygosity NGS SNP
20 months ago by J.F.Jiang ▴ 920
0
votes
1
reply
912
views
Comment: Comment: tumor fraction estimation for ctDNA panel sequecing data
2.2 years ago by J.F.Jiang ▴ 920
1
vote
3
replies
912
views
tumor fraction estimation for ctDNA panel sequecing data
fraction NGS panel tumor ctDNA
updated 2.2 years ago by ▴ 550 • written 2.2 years ago by ▴ 920
0
votes
1
reply
697
views
hgvs annotation from VCF
VCF HGVS annotation
updated 2.2 years ago by 21k • written 2.2 years ago by ▴ 920
0
votes
0
replies
390
views
any tool to plot the fragment profile for ctDNA samples?
fragment ctDNA
2.3 years ago by J.F.Jiang ▴ 920
3
votes
10
replies
8.6k
views
6 follow
GATK HaolotypeCaller takes too much time for variant calling
HaplotypeCaller GATK
updated 5 weeks ago by 43k • written 6.5 years ago by ▴ 920
0
votes
0
replies
818
views
genomewide CNV analysis and plot from low pass WGS data
CNV CNVSEQ WGS
3.3 years ago by J.F.Jiang ▴ 920
0
votes
4
replies
1.0k
views
public tools to distinguish germline variants from somatic ones in NGS data without matched normal
germline somatic NGS tumor
updated 3.4 years ago by 20 • written 3.5 years ago by ▴ 920
0
votes
0
replies
1.0k
views
Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
3.5 years ago by J.F.Jiang ▴ 920
0
votes
1
reply
1.0k
views
Comment: C: public tools to distinguish germline variants from somatic ones in NGS data with
3.5 years ago by J.F.Jiang ▴ 920
0
votes
0
replies
767
views
best tool to evaluate the CNV status of germline samples using 1x WGS
CNV WGS
3.5 years ago by J.F.Jiang ▴ 920
0
votes
0
replies
659
views
Max mutation allele frequency against tumor purity
tumor AF PURITY
3.7 years ago by J.F.Jiang ▴ 920
0
votes
1
reply
972
views
Comment: C: HPV EBV typing from cancer genome data
3.8 years ago by J.F.Jiang ▴ 920
2
votes
4
replies
972
views
HPV EBV typing from cancer genome data
HPV EBV NGS
updated 3.8 years ago by ★ 2.9k • written 3.8 years ago by ▴ 920
32
votes
12
replies
23k
views
9 follow
Bwa Mem Method For Mapping, With Or Without Trimming Reads?
bwa
updated 3.8 years ago by 20 • written 10.4 years ago by ▴ 920
0
votes
1
reply
1.0k
views
LOH segment inferring from WES data for germline sample
LOH WES
4.0 years ago by J.F.Jiang ▴ 920
1
vote
5
replies
2.2k
views
fusion detection for DNA Sequencing data
fusion NGS DNA
updated 4.1 years ago by ★ 2.9k • written 4.1 years ago by ▴ 920
0
votes
1
reply
2.2k
views
Comment: C: fusion detection for DNA Sequencing data
4.1 years ago by J.F.Jiang ▴ 920
1
vote
0
replies
2.2k
views
Comment: C: fusion detection for DNA Sequencing data
4.1 years ago by J.F.Jiang ▴ 920
1
vote
0
replies
1.5k
views
Comment: C: CNV analysis for tumor panel
4.1 years ago by J.F.Jiang ▴ 920
1
vote
1
reply
697
views
looking somatic variants interpreter, AS CKB database
ckb somatic interpreter
updated 4.2 years ago by 88k • written 4.3 years ago by ▴ 920
2
votes
5
replies
2.7k
views
remove primer sequences from BAM file
bam primer
updated 4.4 years ago by • 0 • written 5.7 years ago by ▴ 920
0
votes
2
replies
1.0k
views
convenient tools to collect target mapping metrics
target mapping
updated 4.4 years ago by 20 • written 4.5 years ago by ▴ 920
0
votes
0
replies
1.0k
views
Comment: C: convenient tools to collect target mapping metrics
4.5 years ago by J.F.Jiang ▴ 920
0
votes
0
replies
1.1k
views
calculate MSI STATUS using predefined MSI loci
MSI msisensor
4.6 years ago by J.F.Jiang ▴ 920
0
votes
1
reply
23k
views
Comment: C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
updated 4.6 years ago by 43k • written 10.4 years ago by ▴ 920
2
votes
5
replies
1.5k
views
CNV analysis for tumor panel
CNV
updated 4.8 years ago by ★ 2.8k • written 4.8 years ago by ▴ 920
1
vote
5
replies
2.9k
views
amplicon based germline CNV caller
amplicon germline CNV
updated 4.8 years ago by ▴ 90 • written 6.7 years ago by ▴ 920
0
votes
1
reply
1.5k
views
Comment: A: CNV analysis for tumor panel
4.8 years ago by J.F.Jiang ▴ 920
0
votes
2
replies
1.4k
views
pairwise calculation of relationship based on selected SNPs with MAF>0.3
relationship SNP
updated 5.4 years ago by 20 • written 6.5 years ago by ▴ 920
3
votes
3
replies
2.2k
views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype simulation SNP MAF LD
updated 5.5 years ago by 11k • written 6.4 years ago by ▴ 920
0
votes
0
replies
2.6k
views
Comment: C: Free Genetic Genealogy Software
5.7 years ago by J.F.Jiang ▴ 920
0
votes
0
replies
2.7k
views
Comment: C: remove primer sequences from BAM file
5.7 years ago by J.F.Jiang ▴ 920
0
votes
1
reply
2.7k
views
Comment: C: remove primer sequences from BAM file
updated 5.7 years ago by 47k • written 5.7 years ago by ▴ 920
0
votes
2
replies
1.8k
views
autosomal ancestry inference
GWAS ancestry
updated 5.7 years ago by 88k • written 5.7 years ago by ▴ 920
0
votes
1
reply
1.7k
views
how to genotype given SNP alleles from NGS data using freebayes
genotype NGS freebayes
updated 6.4 years ago by • 0 • written 6.6 years ago by ▴ 920
0
votes
0
replies
1.7k
views
Comment: C: extract region bam
6.4 years ago by J.F.Jiang ▴ 920
0
votes
2
replies
1.7k
views
extract region bam
bam region
updated 6.4 years ago by 35k • written 6.4 years ago by ▴ 920
0
votes
0
replies
1.4k
views
Comment: C: pairwise calculation of relationship based on selected SNPs with MAF>0.3
6.4 years ago by J.F.Jiang ▴ 920
273 results • Page 1 of 6
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