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0
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4.1k
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Comment: C: Calculating Tajima's D from SNP frequency data
3.3 years ago by Jautis ▴ 560
0
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0
replies
3.8k
views
Comment: C: A strange R limma voom function mean-variance trend
3.3 years ago by Jautis ▴ 560
0
votes
0
replies
8.0k
views
Answer: A: 012 genotype matrix using vcf tools
3.4 years ago by Jautis ▴ 560
7
votes
15
replies
7.1k
views
6 follow
Modifying fasta file based on vcf information
reference-genome vcf fasta
updated 16 months ago by 43k • written 8.9 years ago by ▴ 560
0
votes
0
replies
623
views
GO based on NCBI annotation
genome enrichment GSEA GO
3.7 years ago by Jautis ▴ 560
0
votes
0
replies
1.2k
views
Comment: C: Phasing non-human genomes with Beagle - do I need to divide subjects by populati
3.9 years ago by Jautis ▴ 560
0
votes
1
reply
13k
views
Comment: C: How to remove a list of reads from fastq file?
3.9 years ago by Jautis ▴ 560
0
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0
replies
1.2k
views
Convert VCF + LDhelmet Recombination Rates to EIGENSTRAT format
vcf linkage SNP genome
4.2 years ago by Jautis ▴ 560
0
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0
replies
1.0k
views
find position of snps in cM, given recombination map from ldhelmet
recombination genome physical position
4.2 years ago by Jautis ▴ 560
0
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0
replies
2.4k
views
Comment: C: sed (or similar) command to remove part of the FORMAT from a vcf file?
4.2 years ago by Jautis ▴ 560
2
votes
2
replies
2.4k
views
sed (or similar) command to remove part of the FORMAT from a vcf file?
vcf sed processing
updated 4.2 years ago by 16k • written 4.2 years ago by ▴ 560
0
votes
1
reply
14k
views
Comment: C: How to combine chromosome vcf files
4.2 years ago by Jautis ▴ 560
0
votes
0
replies
2.6k
views
Comment: C: Phylogenetic distance betwee species
updated 4.4 years ago by 43k • written 8.5 years ago by ▴ 560
2
votes
0
replies
4.5k
views
Comment: C: Good Bioinformatics research papers
updated 4.5 years ago by 43k • written 8.5 years ago by ▴ 560
0
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1
reply
3.6k
views
Comment: C: Taking genotypes out of a vcf file
updated 4.5 years ago by 43k • written 8.8 years ago by ▴ 560
0
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0
replies
13k
views
Comment: C: Calculating the bisulfite conversion rate
updated 4.5 years ago by 43k • written 8.8 years ago by ▴ 560
4
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2
replies
13k
views
Answer: A: Calculating the bisulfite conversion rate
updated 4.5 years ago by 43k • written 8.8 years ago by ▴ 560
0
votes
0
replies
1.8k
views
Comment: C: vcftools minDP filter not working for samtools genotype calling output
4.6 years ago by Jautis ▴ 560
1
vote
2
replies
1.8k
views
vcftools minDP filter not working for samtools genotype calling output
genotype filtering SNP SNP-calling
4.6 years ago by Jautis ▴ 560
0
votes
1
reply
991
views
Efficiently run blat for long sequences
blat alignment sequence assembly
updated 4.7 years ago by ★ 2.5k • written 4.7 years ago by ▴ 560
1
vote
1
reply
1.4k
views
Annotate CpG Islands for a new genome
CpG assembly annotation
updated 5.1 years ago by ★ 3.7k • written 5.1 years ago by ▴ 560
1
vote
8
replies
2.5k
views
Error in transferring annotations to a new assembly using RATT
alignment annotation software error Assembly
updated 5.2 years ago by 35k • written 5.4 years ago by ▴ 560
0
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2
replies
2.5k
views
Comment: C: Error in transferring annotations to a new assembly using RATT
5.4 years ago by Jautis ▴ 560
0
votes
2
replies
2.5k
views
Comment: C: Error in transferring annotations to a new assembly using RATT
5.4 years ago by Jautis ▴ 560
2
votes
1
reply
2.6k
views
Create a pseudo-haploid fasta file based genotype calls for an individual (vcf file)
vcf sequence assembly SNP
updated 5.5 years ago by ★ 1.6k • written 5.5 years ago by ▴ 560
0
votes
0
replies
1.1k
views
Find SNPs which disrupt CpG sites
vcf genome variants
5.6 years ago by Jautis ▴ 560
0
votes
0
replies
1.5k
views
Determine the derived allele
alignment
5.7 years ago by Jautis ▴ 560
0
votes
0
replies
2.7k
views
Comment: C: GOseq with non-supported organism
5.8 years ago by Jautis ▴ 560
1
vote
2
replies
2.7k
views
GOseq with non-supported organism
GO GOseq R
5.8 years ago by Jautis ▴ 560
0
votes
1
reply
1.5k
views
Comment: C: Find chromosomal location of a scaffold
5.8 years ago by Jautis ▴ 560
0
votes
1
reply
1.5k
views
Comment: C: Find chromosomal location of a scaffold
5.8 years ago by Jautis ▴ 560
1
vote
5
replies
1.5k
views
Find chromosomal location of a scaffold
genome mapping
updated 5.8 years ago by 35k • written 5.8 years ago by ▴ 560
0
votes
1
reply
3.7k
views
Comment: C: Convert an altered sam file into a bam file
6.4 years ago by Jautis ▴ 560
3
votes
4
replies
3.7k
views
Convert an altered sam file into a bam file
sam bam sequencing
6.4 years ago by Jautis ▴ 560
0
votes
0
replies
1.8k
views
BSMap to Bismark bam file formats
next-gen sequencing bam bisulfite
6.4 years ago by Jautis ▴ 560
0
votes
0
replies
1.2k
views
Comment: C: Genotype calls for a list of variable sites
6.6 years ago by Jautis ▴ 560
0
votes
2
replies
1.2k
views
Genotype calls for a list of variable sites
genotype-calling GATK variant-calling
updated 6.6 years ago by 161k • written 6.6 years ago by ▴ 560
1
vote
0
replies
7.1k
views
Comment: C: Modifying fasta file based on vcf information
6.9 years ago by Jautis ▴ 560
10
votes
4
replies
6.1k
views
Comparing two phylogenies
covariance phylogeny tree
updated 20 months ago by 43k • written 8.6 years ago by ▴ 560
0
votes
1
reply
1.9k
views
Comment: C: Outputting DP4 flag in GATK
7.1 years ago by Jautis ▴ 560
2
votes
3
replies
1.9k
views
Outputting DP4 flag in GATK
variant calling sequencing gatk
updated 7.1 years ago by 5.7k • written 7.1 years ago by ▴ 560
0
votes
1
reply
1.6k
views
Comment: C: Getting reads that end at a digest site from a sam/bam file
7.2 years ago by Jautis ▴ 560
0
votes
0
replies
1.6k
views
Comment: C: Getting reads that end at a digest site from a sam/bam file
7.2 years ago by Jautis ▴ 560
0
votes
7
replies
1.6k
views
Getting reads that end at a digest site from a sam/bam file
bisulfite digest
updated 7.2 years ago by 161k • written 7.2 years ago by ▴ 560
0
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1
reply
1.6k
views
Comment: C: Getting reads that end at a digest site from a sam/bam file
7.2 years ago by Jautis ▴ 560
0
votes
1
reply
1.8k
views
Calling allele-specific methylation from bisulfite sequencing reads
bisulfite-sequencing allele-specific sequencing
updated 7.3 years ago by 14k • written 7.3 years ago by ▴ 560
1
vote
1
reply
5.8k
views
Comment: C: Downsampling bam file to 2x coverage
7.3 years ago by Jautis ▴ 560
0
votes
1
reply
3.8k
views
Comment: C: Numbers of Samples per Lane in RNAseq
7.3 years ago by Jautis ▴ 560
0
votes
2
replies
5.8k
views
Comment: C: Downsampling bam file to 2x coverage
7.3 years ago by Jautis ▴ 560
0
votes
1
reply
3.8k
views
Comment: C: Numbers of Samples per Lane in RNAseq
7.3 years ago by Jautis ▴ 560
152 results • Page 2 of 4
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