This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Len Trigg
Len Trigg
Reputation:
1,670
Joined:
15.2 years ago
Last seen:
1.6 years ago
Location:
New Zealand
Latest posts by user
2 votes
1 reply
0 views
Answer: A: RTG vcfeval: number of variants reported by vcfeval is not equal to actual numbe
written by Len Trigg Len Trigg
1 vote
0 replies
0 views
Answer: A: VCF evaluation using RTG.jar vcfeval
written by Len Trigg Len Trigg
0 votes
0 replies
0 views
Comment: C: Correct reference for Platinum Genomes?
written by Len Trigg Len Trigg
2 votes
1 reply
0 views
Answer: A: Can a command in RTG (or elsewhere) annotate the TP/TN/FP/FN's produced from RTG
written by Len Trigg Len Trigg
4 votes
1 reply
0 views
Comment: C: VCF - what are overlapping variants?
written by Len Trigg Len Trigg
1 vote
0 replies
0 views
Comment: C: why is variant calling difficult?
written by Len Trigg Len Trigg
0 votes
0 replies
0 views
Answer: A: Create a pseudo-haploid fasta file based genotype calls for an individual (vcf f
written by Len Trigg Len Trigg
0 votes
1 reply
1 view
Answer: A: Simulating Trio Data
written by Len Trigg Len Trigg
1 vote
1 reply
0 views
Answer: A: Identifying De Novo Mutations from vcf files
written by Len Trigg Len Trigg
0 votes
0 replies
1 view
Comment: C: Constructing a mean ROC curve based on 5 iterations
written by Len Trigg Len Trigg
1 vote
0 replies
1 view
Comment: C: compare SV results across samples - Manta, Delly
written by Len Trigg Len Trigg
0 votes
0 replies
1 view
Comment: C: compare SV results across samples - Manta, Delly
written by Len Trigg Len Trigg
3 votes
1 reply
1 view
Answer: A: compare SV results across samples - Manta, Delly
written by Len Trigg Len Trigg
0 votes
0 replies
0 views
Comment: C: MAF vs VAF
written by Len Trigg Len Trigg
1 vote
1 reply
0 views
Comment: C: Can you assume variants not in VCF are all monomorphic for the reference allele?
written by Len Trigg Len Trigg
1 vote
0 replies
0 views
Answer: A: Indel concordance from different VCF files
written by Len Trigg Len Trigg
1 vote
0 replies
0 views
Comment: C: VCF Normalisation is required ?
written by Len Trigg Len Trigg
1 vote
1 reply
0 views
Answer: C: SMaSH installation error
written by Len Trigg Len Trigg
1 vote
0 replies
0 views
Comment: C: Strategies to call variants from a cancer sample
written by Len Trigg Len Trigg
1 vote
1 reply
0 views
Comment: C: Edditing headers from a .vcf.gz file
written by Len Trigg Len Trigg
Latest awards to user
TODO: Awards