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0
votes
2
replies
2.3k
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Trimmomatic: Missing sequence line from record
RNA-Seq
updated 17 months ago by
GenoMax
142k • written 6.8 years ago by
ddzhangzz
▴ 90
2
votes
3
replies
808
views
Are there risks to use a GRCh38 gtf and a hg19 fa in alignment?
RNASeq
updated 2.9 years ago by
swbarnes2
14k • written 2.9 years ago by
ddzhangzz
▴ 90
0
votes
6
replies
3.0k
views
Contrast matrix for paired samples in limma
R
limma
updated 3.7 years ago by
starick.marick
▴ 10 • written 8.2 years ago by
ddzhangzz
▴ 90
7
votes
6
replies
27k
views
Calculate the fold change between two groups
RNA-Seq
updated 3.8 years ago by
naloy
▴ 10 • written 7.8 years ago by
ddzhangzz
▴ 90
4
votes
7
replies
897
views
Strandedness of whole genome sequences?
next-gen
updated 3.8 years ago by
Biostar
20 • written 4.0 years ago by
ddzhangzz
▴ 90
1
vote
1
reply
548
views
Is it possible to pipelined two picard tools into one input?
next-gen
updated 3.9 years ago by
Pierre Lindenbaum
162k • written 3.9 years ago by
ddzhangzz
▴ 90
2
votes
8
replies
4.6k
views
STAR outputs empty alignment
alignment
sequence
updated 4.0 years ago by
montoya.oscar
▴ 50 • written 8.0 years ago by
ddzhangzz
▴ 90
0
votes
1
reply
897
views
Comment:
C: Strandedness of whole genome sequences?
4.0 years ago by
ddzhangzz
▴ 90
3
votes
3
replies
1.2k
views
Check the DNA strands source information of paired RNA-Seq fastq data
RNA-Seq
updated 4.2 years ago by
Biostar
20 • written 7.0 years ago by
ddzhangzz
▴ 90
6
votes
3
replies
2.0k
views
How to subset fastq data based on leading nt of sequences?
RNA-Seq
updated 4.8 years ago by
steve
★ 3.5k • written 4.8 years ago by
ddzhangzz
▴ 90
0
votes
1
reply
2.4k
views
Comment:
C: Gatk Mutec2 germline resources for mouse
5.1 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
1.3k
views
Comment:
C: How does gage test the pathway statistics?
5.2 years ago by
ddzhangzz
▴ 90
1
vote
2
replies
1.3k
views
How does gage test the pathway statistics?
R
bioconductor
updated 5.2 years ago by
zx8754
11k • written 5.2 years ago by
ddzhangzz
▴ 90
1
vote
1
reply
2.2k
views
How to safely rename the chromosome names in fasta and gtf
RNA-Seq
5.3 years ago by
ddzhangzz
▴ 90
1
vote
1
reply
6.2k
views
How to change SM tag in bam file
next-gen
updated 5.9 years ago by
ATpoint
83k • written 5.9 years ago by
ddzhangzz
▴ 90
0
votes
1
reply
1.1k
views
Is there a way to retrieve peptide motifs based on MAF/VEP output?
next-gen
updated 6.0 years ago by
Denise CS
★ 5.2k • written 6.0 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
1.3k
views
Comment:
C: how to split a bam file by read prefix
6.2 years ago by
ddzhangzz
▴ 90
0
votes
2
replies
1.3k
views
how to split a bam file by read prefix
RNA-Seq
updated 6.2 years ago by
Pierre Lindenbaum
162k • written 6.2 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
3.2k
views
Comment:
C: How has StringTie caculated the transcript coverage?
6.3 years ago by
ddzhangzz
▴ 90
3
votes
4
replies
3.2k
views
How has StringTie caculated the transcript coverage?
RNA-Seq
updated 6.3 years ago by
geo.pertea
▴ 130 • written 6.4 years ago by
ddzhangzz
▴ 90
2
votes
4
replies
3.5k
views
How to download NCBI sequences using a list of Refseq IDs?
R
6.6 years ago by
ddzhangzz
▴ 90
2
votes
1
reply
1.5k
views
How to screen TCGA population for a specific mutation using a COSMIC ID
next-gen
updated 6.6 years ago by
Kevin Blighe
88k • written 6.6 years ago by
ddzhangzz
▴ 90
0
votes
2
replies
1.8k
views
Why Trimmoatic assign paired sequences to unpaired after adapter trimming
RNA-Seq
6.6 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
1.8k
views
Comment:
C: Why Trimmoatic assign paired sequences to unpaired after adapter trimming
6.6 years ago by
ddzhangzz
▴ 90
0
votes
3
replies
2.6k
views
From bam files to isoform read counts
RNA-Seq
updated 6.8 years ago by
firatuyulur
▴ 320 • written 7.2 years ago by
ddzhangzz
▴ 90
0
votes
1
reply
1.9k
views
Comment:
C: How to subset a UCSC table
7.0 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
1.9k
views
Comment:
C: How to subset a UCSC table
7.0 years ago by
ddzhangzz
▴ 90
2
votes
5
replies
1.9k
views
How to subset a UCSC table
Assembly
7.0 years ago by
ddzhangzz
▴ 90
0
votes
1
reply
1.2k
views
Comment:
C: Check the DNA strands source information of paired RNA-Seq fastq data
7.0 years ago by
ddzhangzz
▴ 90
5
votes
4
replies
919
views
Quick check of the RNASeq length for a bunch of files
RNA-Seq
updated 7.1 years ago by
GenoMax
142k • written 7.1 years ago by
ddzhangzz
▴ 90
7
votes
4
replies
4.3k
views
Extract mutations for a specific gene from a vcf file
VCF
updated 7.2 years ago by
Santosh Anand
5.7k • written 7.2 years ago by
ddzhangzz
▴ 90
0
votes
1
reply
2.3k
views
how to map UCSC isoform id to its isoform symbols?
RNA-Seq
updated 7.2 years ago by
Biostar
20 • written 7.7 years ago by
ddzhangzz
▴ 90
0
votes
4
replies
1.4k
views
cutadapt cut the whole sequence from RNASeq fastq file
RNA-Seq
7.3 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
1.4k
views
Comment:
C: cutadapt cut the whole sequence from RNASeq fastq file
7.3 years ago by
ddzhangzz
▴ 90
0
votes
1
reply
1.4k
views
Comment:
C: cutadapt cut the whole sequence from RNASeq fastq file
7.3 years ago by
ddzhangzz
▴ 90
1
vote
1
reply
3.7k
views
How to link TCGA/GDC HTSeq or FPKM data with clinical data?
RNA-Seq
updated 7.3 years ago by
Smandape
▴ 120 • written 7.5 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
1.9k
views
Annotation document for Agilent G4851C (SurePrint G3 Human Gene Expression V3 Microarray Kit )
Microarray
7.3 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
2.1k
views
Comment:
C: Alternative splicing analysis of targeted RNASeq data
7.3 years ago by
ddzhangzz
▴ 90
1
vote
4
replies
2.1k
views
Alternative splicing analysis of targeted RNASeq data
RNA-Seq
updated 7.3 years ago by
EagleEye
7.5k • written 7.3 years ago by
ddzhangzz
▴ 90
0
votes
1
reply
27k
views
Comment:
C: Calculate the fold change between two groups
7.8 years ago by
ddzhangzz
▴ 90
0
votes
1
reply
2.2k
views
Comment:
C: Should I trim adapter for single-end RNASeq reads?
7.8 years ago by
ddzhangzz
▴ 90
4
votes
3
replies
2.2k
views
Should I trim adapter for single-end RNASeq reads?
RNA-Seq
updated 7.8 years ago by
Devon Ryan
104k • written 7.8 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
4.6k
views
Comment:
C: STAR outputs empty alignment
8.0 years ago by
ddzhangzz
▴ 90
4
votes
2
replies
2.6k
views
bowtie2 output only valid alignments
RNA-Seq
8.1 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
2.7k
views
Comment:
C: How to divide the reference sequence into batches or chunks
8.1 years ago by
ddzhangzz
▴ 90
0
votes
1
reply
2.7k
views
Comment:
C: How to divide the reference sequence into batches or chunks
8.1 years ago by
ddzhangzz
▴ 90
2
votes
7
replies
2.7k
views
How to divide the reference sequence into batches or chunks
RNA-Seq
8.1 years ago by
ddzhangzz
▴ 90
5
votes
4
replies
4.3k
views
Align RNASeq reads to combined genomes
RNA-Seq
8.1 years ago by
ddzhangzz
▴ 90
2
votes
0
replies
4.3k
views
Answer:
A: Align RNASeq reads to combined genomes
8.1 years ago by
ddzhangzz
▴ 90
0
votes
0
replies
4.3k
views
Comment:
C: Align RNASeq reads to combined genomes
8.1 years ago by
ddzhangzz
▴ 90
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