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firatuyulur
firatuyulur
Reputation:
320
Joined:
10.4 years ago
Last seen:
5.1 years ago
Location:
United Kingdom
Latest posts by user
0 votes
2 replies
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Comment: Comment: remove unmapped reads on a specific chromosome only
written by firatuyulur firatuyulur
0 votes
1 reply
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Comment: Comment: remove unmapped reads on a specific chromosome only
written by firatuyulur firatuyulur
0 votes
7 replies
3.0K views
remove unmapped reads on a specific chromosome only
bam remove unmapped
updated by i.sudbery i.sudbery • written by firatuyulur firatuyulur
1 vote
0 replies
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Comment: C: Bam File: Change Chromosome Notation
written by firatuyulur firatuyulur
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1 reply
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Comment: C: genome in IGV session file
written by firatuyulur firatuyulur
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0 replies
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Comment: C: str handling in python
written by firatuyulur firatuyulur
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Answer: A: I need allele copy number information for running PyClone
written by firatuyulur firatuyulur
2 votes
1 reply
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Answer: A: equal distance between groups in a barplot
written by firatuyulur firatuyulur
1 vote
1 reply
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Comment: C: removing outliers before running DESeq2
written by firatuyulur firatuyulur
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1 reply
1 view
Comment: C: size of the pathways for analysis and filtration
written by firatuyulur firatuyulur
1 vote
1 reply
1 view
Answer: A: rRNA remove from RNAseq data
written by firatuyulur firatuyulur
0 votes
3 replies
1.9K views
size of the pathways for analysis and filtration
pathways rna-seq enrichment
written by firatuyulur firatuyulur
0 votes
0 replies
1.5K views
Normalizing count data with several treatment dosages
rna-seq normalization deseq2 edger qc
written by firatuyulur firatuyulur
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0 replies
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Comment: C: plotting an expression data in heat map/ hierarchical clustering
written by firatuyulur firatuyulur
1 vote
1 reply
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Answer: A: ATAC-seq: differential peaks using macs2 bdgdiff yields strange results
written by firatuyulur firatuyulur
0 votes
1 reply
1.7K views
comparing DEGs with same treatment but different control batch
deseq2 rna-seq statistics correlation
updated by swbarnes2 swbarnes2 • written by firatuyulur firatuyulur
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1 reply
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Answer: A: Filter by Fold change in DESeq2
written by firatuyulur firatuyulur
1 vote
1 reply
0 views
Comment: C: Optimization of RNA-Seq data mapping with tophat2
written by firatuyulur firatuyulur
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0 replies
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Answer: A: From bam files to isoform read counts
written by firatuyulur firatuyulur
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0 replies
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Comment: C: macs2 normalization on broadPeak
written by firatuyulur firatuyulur
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