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23
votes
7
replies
4.6k
views
News: Research accounts on GitHub
github git
updated 14 months ago by 43k • written 10.0 years ago by 161k
24
votes
7
replies
4.4k
views
News: #Bioinformatics Crowdcoding
crowd-coding
updated 14 months ago by 43k • written 10.8 years ago by 161k
3
votes
0
replies
4.4k
views
News: Free Online Harvardx Course, Data Analysis For Genomics, Starts April 7
methylation bioconductor ChIP-seq RNA-seq R
updated 14 months ago by 43k • written 10.1 years ago by ★ 2.2k
2
votes
0
replies
4.3k
views
News: Workshop: Analysis of single cell RNA-seq data
R next-gen RNA-Seq alignment
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
1
vote
0
replies
4.3k
views
News: Hands-On Training in RNA-seq Bioinformatics: A Practical Introduction - Mapping, Visualization, Basic Analyses
next-gen RNA-Seq workshop
updated 14 months ago by 43k • written 9.9 years ago by 11k
6
votes
4
replies
4.3k
views
News: awesome-single-cell: a list of open-source single-cell analysis software and workshop materials
single-cell RNA-Seq
updated 13 months ago by 43k • written 7.9 years ago by 26k
6
votes
9
replies
4.3k
views
News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.
1000genomes
updated 14 months ago by 43k • written 9.9 years ago by 161k
6
votes
7
replies
4.2k
views
News: New in DiffBind: dba.plotProfile() - Peak profiles and profile heatmaps
DiffBind ChIP-seq deepTools visualization ATAC-seq
20 months ago by Rory Stark ★ 2.0k
54
votes
24
replies
4.2k
views
12 follow
News: Big news from Microsoft. BASH on windows.
windows
updated 13 months ago by 43k • written 8.1 years ago by ★ 3.2k
11
votes
1
reply
4.2k
views
News: GATB will provide developer support via Biostar
minia dsk gatb
updated 2.3 years ago by 43k • written 10.0 years ago by ★ 1.5k
7
votes
8
replies
4.1k
views
News: Next-Gen Sequencing Tutorials On Cubelp (Cranfield Bioinformatics Electronic Learning Platform)
genome chip-seq snp assembly
updated 19 months ago by 43k • written 10.7 years ago by ▴ 610
12
votes
17
replies
4.1k
views
6 follow
News: A programming language for living cells [Cello]
dna sequence research language
updated 13 months ago by 43k • written 8.1 years ago by 11k
27
votes
9
replies
4.1k
views
News: OSX 10.11 released 30th Sep will be "rootless"
mac osx
updated 20 months ago by 43k • written 8.6 years ago by 13k
8
votes
10
replies
4.1k
views
News: New versions of Minia and DSK (2.0.x)
minia dsk assembly gatb
updated 2.1 years ago by 43k • written 9.2 years ago by ★ 1.5k
18
votes
11
replies
4.0k
views
News: Full Genome Sequencing Service 30x whole human genome sequencing for $3,490 (project cancelled)
genome next-gen-sequencing
updated 2.3 years ago by 43k • written 9.6 years ago by ▴ 100
8
votes
6
replies
4.0k
views
News: Last Call: Upcoming Workshop - Rna-Seq Bioinformatics: A Practical Introduction
RNA-seq
updated 14 months ago by 43k • written 11.3 years ago by 11k
4
votes
0
replies
4.0k
views
News: RepurposeDB - A New Reference Database of Drug Repositioning
precision-medicine drug-repositioning
updated 12 months ago by 43k • written 7.2 years ago by 18k
1
vote
0
replies
4.0k
views
News: Workshop: Bioinformatics for Beginners, University of Maryland, College Park, USA
next-gen RNA-Seq workshop assembly
updated 15 months ago by 43k • written 9.0 years ago by ▴ 20
51
votes
17
replies
4.0k
views
News: Biostars 3.0 is now under testing. It has groups, charms and other interesting features.
meta biostars
updated 14 months ago by 43k • written 9.1 years ago by 100k
3
votes
3
replies
3.9k
views
News: A Tale Of Next Generation Sequencing Platforms: Ion Torrent, Pacific Biosciences And Illumina Miseq
sequencing
updated 14 months ago by 43k • written 11.7 years ago by 100k
12
votes
7
replies
3.9k
views
News: Welcome Ensembl REST with more endpoints!
ensembl rest-api
updated 14 months ago by 43k • written 9.6 years ago by ★ 5.2k
7
votes
3
replies
3.9k
views
News: Visualizing genomic data: techniques and challenges. Our interview with Dr. Malachi Griffith, Dr. Obi Griffith and Mr. Zachary Skidmore (The Griffith…
R RNA-Seq genome NGSdata
updated 11 months ago by 43k • written 6.9 years ago by ★ 2.5k
17
votes
9
replies
3.8k
views
News: My Ncbi Curriculum Vitae Web Application: Sciencv
ncbi
updated 14 months ago by 43k • written 10.6 years ago by 161k
3
votes
2
replies
3.8k
views
News: Course/Workshop: Informatics For Rna-Sequence Analysis (June, 2013)
RNA-seq
updated 14 months ago by 43k • written 11.3 years ago by 20k
33
votes
5
replies
3.8k
views
News: FINAL CALL: Epigenetics Workshop - DNA Methylation Data Analysis (some last seats available)
Epigenetics Workshop Bisulfite-Sequencing
updated 13 months ago by 43k • written 7.9 years ago by ▴ 460
14
votes
3
replies
3.7k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 11 months ago by 43k • written 6.0 years ago by 5.8k
0
votes
0
replies
3.7k
views
News: Journal Of Bioinformatics Research Studies- Call For Papers
publication biology
updated 14 months ago by 43k • written 10.1 years ago by • 0
9
votes
4
replies
3.7k
views
News: Conference Announcement - Camda 2013
conference classification
updated 14 months ago by 43k • written 11.3 years ago by ▴ 240
5
votes
2
replies
3.7k
views
News: Tuesday 10/29 Live Tour Of New Features In Integrated Genome Browser 8
genome-browser RNA-seq ChIP-seq
updated 14 months ago by 43k • written 10.5 years ago by ★ 2.4k
11
votes
2
replies
3.7k
views
News: Coursera: Computational Molecular Evolution
course
updated 14 months ago by 43k • written 11.0 years ago by 161k
9
votes
5
replies
3.7k
views
News: SAMTOOLS 1.4 released
samtools
updated 12 months ago by 43k • written 7.1 years ago by 161k
6
votes
1
reply
3.6k
views
News: Symposium And Rna-Seq Data Analysis Workshop Charlotte May 13-14
RNA RNA-seq training
updated 14 months ago by 43k • written 10.1 years ago by ★ 2.4k
27
votes
7
replies
3.6k
views
News: The Biostar Swarm: A Visualization
biostars
updated 14 months ago by 43k • written 11.2 years ago by 100k
5
votes
1
reply
3.5k
views
News: Broad Gatk Haplotypecaller Speed Improved 2-4 X By Cooperation With Intel, And Incremental Multi-Sample Calling Made Possible!
gatk variant-calling
updated 14 months ago by 43k • written 10.1 years ago by ★ 5.3k
0
votes
1
reply
3.5k
views
News: Workshop: Introductory Population Genomics: From Data to Inference
next-gen SNP R
updated 12 months ago by 43k • written 7.5 years ago by ★ 2.5k
2
votes
0
replies
3.5k
views
News: Bioinformatics Open Days 2Nd Edition - 14 And 15 Of March, 2013 At The University Of Minho, Campus Gualtar, Braga, Portugal.
conference
updated 14 months ago by 43k • written 11.3 years ago by ▴ 20
0
votes
2
replies
3.5k
views
News: Course: Practical GWAS using Linux and R. 23-27 October 2017, Berlin (Germany)
GWAS Linux R
updated 11 months ago by 43k • written 6.7 years ago by ★ 2.5k
2
votes
0
replies
3.4k
views
News: Synthetic DNA/RNA Spike-in standards for NGS
RNA-Seq assay spike-in
updated 13 months ago by 43k • written 7.7 years ago by 142k
12
votes
8
replies
3.4k
views
News: 'Potential Rna-Dna Binding Site In Alu Repeat', Or 'Why Should I Allow Multiple Mapping Positions When Analyzing Chipseq Data?'
chipseq rna
updated 14 months ago by 43k • written 10.8 years ago by 11k
1
vote
0
replies
3.4k
views
News: Command Line Bioinformatics and High-throughput Sequencing Analysis Course
training course
updated 2.4 years ago by 43k • written 9.7 years ago by 7.4k
5
votes
2
replies
3.4k
views
News: Summary of AGBT 2015
AGBT2015 AGBT
updated 13 months ago by 43k • written 9.2 years ago by ▴ 650
10
votes
17
replies
3.4k
views
7 follow
News: Tell us what you think of the ENA browser?
ena
updated 12 months ago by 43k • written 7.5 years ago by ★ 1.8k
10
votes
0
replies
3.4k
views
News: 1000 Genomes data on GRCh38
1000Genomes GRCh38 alts alignment
updated 20 months ago by 43k • written 8.6 years ago by ▴ 100
14
votes
4
replies
3.4k
views
News: FULL: NGS Data Analysis Workshop for Beginners in Munich (29 June - 1 Juli 2016)
RNA-Seq next-gen NGS
updated 22 months ago by 43k • written 8.2 years ago by 11k
14
votes
5
replies
3.4k
views
News: Science Article On Social Influence Bias On Voting Patterns ("Herding") With Impact On Biostar.
meta biostars
updated 14 months ago by 43k • written 10.7 years ago by 54k
8
votes
1
reply
3.4k
views
News: LAST DAY TO REGISTER - NGS Workshop 2015: A Practical Introduction to NGS Data Analysis (Oxford, UK)
RNA-Seq workshop
updated 14 months ago by 43k • written 9.5 years ago by 11k
11
votes
0
replies
3.3k
views
News: BWA 0.7.11 is out, supports ALT contigs
BWA
updated 13 months ago by 43k • written 9.4 years ago by 104k
4
votes
3
replies
3.3k
views
News: CAFE v4.0 available
phylogenetics CAFE
updated 11 months ago by 43k • written 7.1 years ago by ▴ 150
2
votes
0
replies
3.3k
views
News: "Practical GWAS Using Linux and R" Workshop
GWAS Linux R next-gen
updated 11 months ago by 43k • written 6.8 years ago by ★ 2.5k
9
votes
3
replies
3.3k
views
News: New Human Genome Assembly (Grch38) Released
human-genome assembly
updated 14 months ago by 43k • written 10.4 years ago by 161k
1,000 results • Page 2 of 20
Recent Votes
Comment: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: GRCh38.gmap file
Answer: Design matrix Differential expression analysis
A: PCA plot from read count matrix from RNA-Seq
A: PCA plot from read count matrix from RNA-Seq
Answer: Design matrix Differential expression analysis
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Comment: Design matrix Differential expression analysis by Gordon Smyth ★ 7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1)) It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file by lorena9132 ▴ 10
Hi Mathew, The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file by Mathew ▴ 20
Hi, I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data by Mathew ▴ 20
Hi, You asked three questions so I will attempt to help the best I can **What should be the optimal GC score cutoff** It sounds li…
Comment: Design matrix Differential expression analysis by SHN ▴ 40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx by vjanve • 0
I ran into same issue of "duplicated gene symbol(s)": 1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, : 22292 dup…
Comment: creating batch colum for batch correction by Expert ▴ 10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction by ATpoint 82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Pindel Segmentation Fault Error by Ruqaiya • 0
This the tool still problematic?
Comment: Segmentation error while using a tool by Ruqaiya • 0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool by Ruqaiya • 0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool by Mensur Dlakic ★ 27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool by Thanujay S • 0
Hey @Ruqaiya! Can you please give more details on why smalt is opted here? According to what I can see, the tool has become obsolete! Why …
Comment: Extracting mutation status from MAF files - TCGA by Thanujay S • 0
Hey! Can you explain the question further? What have you tried?
Comment: Downloading older version of a tool by Ruqaiya • 0
I tried the 2nd option only. I got the files of older version from the author but that version isn't working on my WSL, it's showing Segmen…
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