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News: 1000 Genomes : The Initial Phase 3 variant list and phased genotypes.

The initial call set from the 1000 Genomes Project Phase 3 analysis is now available on (the) ftp site in the directory ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/release/20130502/

These release contains more than 79 million variant sites and includes not just biallelic snps but also indels, deletions, complex short substitutions and other structural variant classes. It is based on data from 2535 individuals from 26 different populations around the world.

1000genomes
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updated by Ram Ram • written by Pierre Lindenbaum Pierre Lindenbaum

Thanks Pierre. Is there any detailed information available on the workflows that were used to generate this data?

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updated by Ram Ram • written by Alastair Kerr Alastair Kerr

There's more info in the README.

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updated by Ram Ram • written by Emily Emily

saw that thanks Emily, but quite general and not enough to reconstruct from raw data

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updated by Ram Ram • written by Alastair Kerr Alastair Kerr

There will be a proper paper out at some point with all the nitty gritty.

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updated by Ram Ram • written by Emily Emily

Looking forward to it. Will you be using a preprint server?

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updated by Ram Ram • written by Alastair Kerr Alastair Kerr

No idea, I'm afraid.

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updated by Ram Ram • written by Emily Emily

oh no, now I will have to repeat all the analysis again ;-)

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written by Giovanni M Dall'Olio Giovanni M Dall'Olio

"you just have to press a button or run a script, right?"

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written by brentp brentp

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