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378 results • Page 2 of 8
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30
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13
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3.7k
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11 follow
Forum: what is your daily must see bioinformatics web site?
learn technology
updated 11 months ago by 43k • written 9.7 years ago by 9.7k
7
votes
13
replies
1.4k
views
Forum: How do you validate and verify your pipeline's software updates?
Validation Verification Quality-Assurance
updated 7 months ago by 43k • written 7 months ago by ▴ 10
33
votes
12
replies
1.1k
views
7 follow
Forum: Nextflow and self-made pipelines opinion
nextflow pipeline data-analysis
11 weeks ago by karlaarz ▴ 110
12
votes
12
replies
3.0k
views
Forum: Programming interview via Skype
programming-test interview
updated 11 months ago by 43k • written 5.9 years ago by ▴ 50
21
votes
12
replies
3.6k
views
Forum: How to Use Biostars Part-3: Formatting Text and Using GitHub Gists
meta how-to documentation
4 months ago by Ram 43k
22
votes
12
replies
1.8k
views
6 follow
Forum: What were the most impactful Bioinformatics papers published this year
papers publications
updated 11 months ago by 43k • written 4.4 years ago by ▴ 520
12
votes
12
replies
1.4k
views
7 follow
Forum: Who qualify as a world class bioinformatician as seen in job ads
world-class bioinformatician qualification
updated 11 months ago by 43k • written 4.1 years ago by • 0
4
votes
12
replies
1.5k
views
Forum: publicly available data
arrayexpress GEO SRA
updated 11 months ago by 43k • written 4.6 years ago by ▴ 110
23
votes
12
replies
2.0k
views
6 follow
Forum: Whole-Exome Analysis on a Mainstream Desktop PC
NGS whole-exome
updated 11 months ago by 43k • written 3.9 years ago by 11k
18
votes
12
replies
2.5k
views
6 follow
Forum: why GATK makes things more complicated ?
genomics
updated 11 months ago by 43k • written 5.3 years ago by ▴ 280
22
votes
11
replies
3.4k
views
Forum: ExpressionSet in the age of tidyverse
expressionset R bioconductor
updated 12 months ago by 43k • written 6.0 years ago by 13k
21
votes
11
replies
2.6k
views
6 follow
Forum: Rust bioinformatics projects ideas
projects scRNA-seq RNA-seq Rust
updated 5 months ago by 22k • written 14 months ago by ▴ 150
9
votes
11
replies
3.3k
views
7 follow
Forum: Fields with biggest demand for bioinformatics?
career
updated 11 months ago by 43k • written 5.3 years ago by ▴ 200
25
votes
11
replies
3.8k
views
6 follow
Forum: Site Use Guidelines
meta biostars Guidelines
updated 24 days ago by 43k • written 14.6 years ago by 100k
23
votes
11
replies
2.1k
views
9 follow
Forum: file and directory management best practices
file-management
updated 11 months ago by 43k • written 3.8 years ago by ▴ 140
18
votes
11
replies
2.4k
views
8 follow
Forum: Create a File format to store Variant
hgvs json variant
updated 11 months ago by 43k • written 5.9 years ago by ★ 2.4k
14
votes
11
replies
6.8k
views
7 follow
Forum: Do you need a deduplication tool for FASTQ data in fastp?
deduplication fastp
updated 11 months ago by 43k • written 5.0 years ago by ★ 2.5k
15
votes
11
replies
4.8k
views
9 follow
Forum: Methodological problems are extremely common for enrichment analysis - beware the pitfalls before you publish
GSEA DAVID enrichment-analysis -geneontology
updated 12 months ago by 43k • written 2.2 years ago by ★ 1.9k
21
votes
11
replies
2.0k
views
Forum: Most important International Big Data Projects: Genetics and Epigenetics
big-data
updated 11 months ago by 43k • written 5.8 years ago by ★ 9.4k
13
votes
11
replies
4.8k
views
Forum: Anyone using Ubuntu on Windows (WSL)?
ubuntu wsl
updated 11 months ago by 43k • written 5.8 years ago by ▴ 250
17
votes
11
replies
1.0k
views
Forum: How to overcome the imposter syndrome in bioinformatics?
advice
3 months ago by sil_bioinfo ▴ 40
16
votes
10
replies
1.2k
views
6 follow
Forum: F*up Night style events for Bioinformatics ? Comment if you're interested!
mistakes
updated 7 weeks ago by 5.3k • written 7 weeks ago by ★ 2.4k
9
votes
10
replies
1.3k
views
6 follow
Forum: What's more clear, loops or functions?
R
updated 11 months ago by 43k • written 5.6 years ago by ▴ 110
7
votes
10
replies
1.8k
views
Forum: Current MCB major thinking of going into Bioinformatics
career
updated 11 months ago by 43k • written 5.7 years ago by • 0
9
votes
10
replies
17k
views
8 follow
Forum: Open Source Bioinformatics projects for beginners
Open-Source Beginners
updated 3 months ago by • 0 • written 6.3 years ago by ▴ 40
2
votes
10
replies
1.3k
views
Forum: AddHealth Omics Data Source
AddHealthOmics
updated 11 months ago by 43k • written 5.5 years ago by • 0
15
votes
10
replies
2.4k
views
6 follow
Forum: help identifying bioinformatics operations tools
database next-gen operations genomics
updated 11 months ago by 43k • written 5.5 years ago by ▴ 80
14
votes
10
replies
2.2k
views
Forum: WGBS alignment with BitMapperBS
BitMapperBS bismark
updated 11 months ago by 43k • written 4.8 years ago by ★ 9.4k
9
votes
10
replies
1.7k
views
Forum: Brainstorming: applying bioinformatics NOT to public field. Ideas and perspectives
applied-sciences data-analysis
updated 12 months ago by 43k • written 6.1 years ago by ★ 1.3k
19
votes
10
replies
1.6k
views
Forum: Pain points using commercial clouds
gpt tinybio
updated 8 months ago by ▴ 70 • written 8 months ago by ▴ 850
7
votes
9
replies
1.1k
views
Forum: DEG analysis when not replicates are available
NOISeq RNA-Seq edgeR
updated 11 months ago by 43k • written 4.1 years ago by ★ 5.1k
14
votes
9
replies
5.0k
views
8 follow
Forum: MD into bioinformatics
MD career
updated 11 months ago by 43k • written 5.4 years ago by ▴ 30
1
vote
9
replies
1.7k
views
Forum: Care to speculate? Are Protein Fragments or Entire Protein Sequences useful when classifying via Machine Learning techniques
protein Machine-Learning classification
updated 11 months ago by 43k • written 5.3 years ago by ▴ 80
7
votes
9
replies
1.6k
views
Forum: 10 Most important topic in Human evolutionary genomics
evolutionary-genomics evolutionary-medicine
updated 11 months ago by 43k • written 5.1 years ago by ▴ 40
2
votes
9
replies
1.4k
views
Forum: Any good idea for bioinfo final presentation?
R
updated 11 months ago by 43k • written 4.0 years ago by • 0
15
votes
9
replies
2.2k
views
6 follow
Forum: [Opinion] - What alignment software do you use?
next-gen alignment
updated 12 months ago by 43k • written 6.1 years ago by ▴ 30
19
votes
9
replies
3.7k
views
Forum: How to self-study (get onto) Bioinformatics and Data Analysis for Genomic, for working with real life genomics data?
R genome RNA-Seq Python
updated 11 months ago by 43k • written 5.8 years ago by ▴ 760
11
votes
9
replies
2.3k
views
Forum: Survey: help define Gencode and NCBI primary transcripts
refseq ensembl gencode ncbi transcript
updated 12 months ago by 43k • written 6.1 years ago by 23k
8
votes
9
replies
3.7k
views
8 follow
Forum: How can I contribute to the Bioinformatics community as a Software Engineer
software-engineer
updated 11 months ago by 43k • written 5.5 years ago by ★ 1.1k
2
votes
9
replies
1.4k
views
Forum: 'No code' data manipulation tools for bioinformatics
software
updated 11 months ago by 43k • written 3.9 years ago by • 0
7
votes
9
replies
1.5k
views
6 follow
Forum: Mentor for a beginner bioinformatics student
project mentor
6 months ago by UT_FAN ▴ 40
11
votes
9
replies
2.5k
views
7 follow
Forum: Feature Selection and Dimensionality Reduction in 10X scRNA-seq data
software-error pca scRNA-seq
updated 12 months ago by 43k • written 4.4 years ago by 82k
2
votes
9
replies
1.2k
views
Forum: open source projects looking for contributors
open-source
updated 8 months ago by ▴ 70 • written 8 months ago by ▴ 20
2
votes
8
replies
1.7k
views
7 follow
Forum: Which tools do you miss?
software
updated 11 months ago by 43k • written 3.8 years ago by ▴ 110
34
votes
8
replies
2.7k
views
9 follow
Forum: Bioinformatician, a jack of all trades, but in the eye of the CV-beholder a master of none? How can your CV reflect the diverse skills that you have …
cv industry career
updated 11 months ago by 43k • written 4.6 years ago by ▴ 300
7
votes
8
replies
2.0k
views
Forum: Would solving many Rosalind problems show your ability for this field in job-wise?
rosalind career
11 months ago by K • 0
7
votes
8
replies
783
views
Forum: Bioinformatics career transition
career forum
updated 9 weeks ago by ★ 16k • written 9 weeks ago by ▴ 20
3
votes
8
replies
3.5k
views
6 follow
Forum: SSD or HHD for genome analysis
hardware genome sequencing
updated 11 months ago by 43k • written 4.6 years ago by ▴ 20
7
votes
8
replies
1.3k
views
Forum: Guidelines / Limits for Shared Bioinformatics Support
Core Shared-Resources Collaboration
updated 11 months ago by 43k • written 4.5 years ago by 8.2k
22
votes
8
replies
2.0k
views
10 follow
Forum: Is there any online course for bioinformatics right now or in the next two or three months?
online-course mooc
updated 11 months ago by 43k • written 4.1 years ago by ▴ 50
378 results • Page 2 of 8
Recent Votes
Answer: ChatGPT optimized for bioinformatics questions
Comment: ChatGPT optimized for bioinformatics questions
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
C: How can I perform Differential expression analysis with just one control and one
How can I perform Differential expression analysis with just one control and one cancer sample?
Comment: scRNAseq Differential expression analysis
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Recent Replies
Answer: RNAseq coverage vs depth for transcript isoform expression? by Gordon Smyth ★ 7.2k
See the exploration of isoform precision vs read length and sequencing depth in our paper: https://doi.org/10.1093/nar/gkad1167. Our resul…
Comment: How to handle duplicated genes in TCGA data? by txema.heredia ▴ 130
Why does the tool require gene symbols and not ensembl ids? Is it retrieving information from somewhere else? If so, your best bet is to fi…
Comment: how to treat the replicates while performing WGCNA by mavy ▴ 10
Thank you so much for your response . Really appreciate it. I will try the way you mentioned and will get back if I have any query
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
i have the same error, i used high performance computer, here is my code to set memory. srun --nodes=1 --ntasks=1 --cpus-per-task=24 -…
Comment: Overlapping Ranges within Granges object by Alex Reynolds 35k
Yes, `bedmap` will perform operations on one or two BED files.
Comment: B allele frequency (BAF) by aidangcruickshank ▴ 10
Apologies for resurrecting this post, but any idea what that functions "regions" paramater takes? Would it be a GRanges object? The documen…
Comment: How to handle duplicated genes in TCGA data? by Ngrin • 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2 by swbarnes2 14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot by LauferVA 4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by hannes.bongartz • 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot by bk11 ★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool by ntsopoul ▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool by GenoMax 142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation by bk11 ★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs by dthorbur ★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
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