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1,000 results • Page
2 of 20
Sort: Votes
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Votes
Replies
70
votes
19
replies
5.6k
views
13 follow
Forum:
Thrown Into A Bioinformatics Position
computational-analysis
updated 22 months ago by
Ram
43k • written 8.6 years ago by
System
▴ 170
69
votes
39
replies
4.7k
views
14 follow
Forum:
Preparation for Bioinformatics.SE closing
meta
biostars
updated 12 months ago by
Ram
43k • written 7.0 years ago by
John
13k
68
votes
22
replies
8.0k
views
16 follow
Forum:
Learning Python: list of resources
python
updated 13 months ago by
Ram
43k • written 7.6 years ago by
dago
★ 2.8k
68
votes
48
replies
8.9k
views
16 follow
Forum:
Stranger Things: unexpected limitations of popular tools
samtools
hisat2
updated 12 months ago by
Ram
43k • written 6.8 years ago by
Istvan Albert
100k
67
votes
21
replies
6.1k
views
8 follow
Forum:
Meta: Markdown in Biostars (now enabled)
meta
14 months ago by
Ram
43k
67
votes
40
replies
9.7k
views
12 follow
Forum:
I want to re-open the old debate: python or perl ?
perl
python
updated 2.2 years ago by
Ram
43k • written 9.5 years ago by
Gabriel R.
★ 2.9k
66
votes
29
replies
16k
views
15 follow
Forum:
Fundamentals Of Designing Biological Databases?
database
updated 15 months ago by
Ram
43k • written 13.5 years ago by
anon1234z
▴ 130
66
votes
21
replies
6.9k
views
18 follow
Forum:
Is there anyone who was a pure biologist?
next-gen
updated 14 months ago by
Ram
43k • written 10.1 years ago by
Chong Tang
▴ 100
65
votes
26
replies
19k
views
13 follow
Forum:
Macosx For Bioinformatics?
linux
updated 14 months ago by
Ram
43k • written 10.5 years ago by
Eric Normandeau
11k
65
votes
27
replies
7.5k
views
14 follow
Forum:
What is the reason for most software errors in Bioinformatics according to you?
software-error
blast
sequencing
SNP
R
updated 13 months ago by
Ram
43k • written 8.2 years ago by
harne.priyanka
▴ 110
65
votes
57
replies
8.5k
views
12 follow
Forum:
Bioinformatics Mobile App
android
genome
iphone
mutations
updated 2.3 years ago by
Ram
43k • written 9.5 years ago by
aeinsights
▴ 20
64
votes
8
replies
8.3k
views
7 follow
Forum:
Isaac Asimov Accurately Predicts Woes Of Bioinformatician
bioinformatician
updated 14 months ago by
Ram
43k • written 11.0 years ago by
Obi Griffith
20k
64
votes
24
replies
3.1k
views
12 follow
Forum:
How much I must feel useless?
machine-learning
Programming
statistics
updated 11 months ago by
Ram
43k • written 5.6 years ago by
Molecular_genetics
▴ 80
63
votes
28
replies
4.1k
views
11 follow
Forum:
Bioinformatics analyses & errors: need for better post-publication tools?
next-gen
RNA-Seq
updated 13 months ago by
Ram
43k • written 8.0 years ago by
ablanchetcohen
★ 1.2k
63
votes
9
replies
3.9k
views
Forum:
Should The "Post Closing" Option Exist? Vote Now!
meta
updated 14 months ago by
Ram
43k • written 11.0 years ago by
Istvan Albert
100k
63
votes
11
replies
16k
views
9 follow
Forum:
Web Based Interactive Resources To Learn Programming And/Or Bioinformatics
programming
updated 14 months ago by
Ram
43k • written 10.9 years ago by
Malachi Griffith
20k
61
votes
16
replies
8.2k
views
14 follow
Forum:
Rust or C++, what to learn after Go for high-performance bioinformatics tools?
library
updated 16 months ago by
Samuel Lampa
★ 1.3k • written 3.6 years ago by
shenwei356
8.5k
61
votes
70
replies
14k
views
21 follow
Forum:
Biostar 2.0 released
meta
biostars
updated 15 months ago by
Ram
43k • written 10.1 years ago by
Istvan Albert
100k
60
votes
28
replies
8.3k
views
27 follow
Forum:
Jim Robinson of the Integrative Genomics Viewer (IGV) uses this
uses-this
updated 14 months ago by
Ram
43k • written 9.6 years ago by
Istvan Albert
100k
60
votes
25
replies
5.8k
views
8 follow
Forum:
Am I crazy, or are most published RNA-seq studies vastly underpowered?
sample-size
statistical-power
RNA-Seq
updated 11 months ago by
Ram
43k • written 3.8 years ago by
telroyjatter
▴ 230
60
votes
14
replies
12k
views
16 follow
Forum:
Interesting bioinformatics blogs (2017 edition)
blogs
updated 14 months ago by
Ram
43k • written 7.1 years ago by
WouterDeCoster
47k
57
votes
15
replies
4.8k
views
9 follow
Forum:
Entice Biologists To Learn R
r
updated 15 months ago by
Ram
43k • written 12.6 years ago by
Madelaine Gogol
5.3k
57
votes
43
replies
16k
views
8 follow
Forum:
Best RNA-Seq aligner: A comparison of mapping tools
NGS
alignment
genome
RNA-Seq
sequence
updated 14 months ago by
Ram
43k • written 5.3 years ago by
David Langenberger
11k
57
votes
19
replies
28k
views
6 follow
Forum:
Attention: Bowtie2 And Multiple Hits
next-gen
bowtie
mapping
updated 14 months ago by
Ram
43k • written 11.6 years ago by
David Langenberger
11k
57
votes
9
replies
5.7k
views
14 follow
Forum:
Handbooks for Bioinformatics Ninjas
gallery
updated 13 months ago by
Ram
43k • written 8.0 years ago by
Shicheng Guo
★ 9.4k
57
votes
42
replies
6.7k
views
12 follow
Forum:
Why is academic software hard to install?
software-installation
updated 2.3 years ago by
Ram
43k • written 9.6 years ago by
lh3
33k
57
votes
15
replies
6.3k
views
9 follow
Forum:
Good practices while dealing with very large datasets
Big-Data
Programming
updated 12 months ago by
Ram
43k • written 7.0 years ago by
VHahaut
★ 1.2k
56
votes
19
replies
4.1k
views
9 follow
Forum:
How to apply for a job
resume
cover-letter
application
CV
updated 12 months ago by
Ram
43k • written 6.8 years ago by
Emily
23k
55
votes
16
replies
6.0k
views
8 follow
Forum:
Mission Impossible: you have 1 minute to analyze the Ebola Genome
ebola
mission-impossible
updated 20 months ago by
Ram
43k • written 9.5 years ago by
Istvan Albert
100k
54
votes
16
replies
5.7k
views
13 follow
Forum:
The new era of bioinformatics: simple and fast tools, fewer and more informative data
kallisto
computational-cost
updated 15 months ago by
Ram
43k • written 9.0 years ago by
Istvan Albert
100k
54
votes
34
replies
5.0k
views
13 follow
Forum:
Should We Release Database Dumps Of All Questions On Biostar?
meta
biostars
updated 15 months ago by
Ram
43k • written 13.5 years ago by
Istvan Albert
100k
52
votes
8
replies
4.8k
views
8 follow
Forum:
What Is The Proper Way To Think About Reinventing The Wheel As A Bioinformatician?
software-development
updated 14 months ago by
Ram
43k • written 11.3 years ago by
KCC
★ 4.1k
52
votes
18
replies
6.4k
views
14 follow
Forum:
Do You Feel Good Or Bad About Putting Your Photo At Biostar?
meta
biostars
updated 15 months ago by
Ram
43k • written 10.7 years ago by
ugly.betty77
★ 1.1k
51
votes
24
replies
9.2k
views
7 follow
Forum:
Bio-informatics salary distribution versus Java salary distribution in the UK
career
updated 2.4 years ago by
Ram
43k • written 9.8 years ago by
William
★ 5.3k
51
votes
16
replies
5.9k
views
11 follow
Forum:
What Are The Most Influential Bioinformatics/Computational Biology Papers Of 2011?
papers
updated 15 months ago by
Ram
43k • written 12.4 years ago by
Farhat
★ 2.9k
50
votes
20
replies
6.1k
views
18 follow
Forum:
Explain bioinformatics to a 10 year old
bioinformatics
updated 14 months ago by
Ram
43k • written 8.2 years ago by
novice
★ 1.1k
50
votes
19
replies
5.0k
views
7 follow
Forum:
Proposal: Biostar Wants To Run Your Ads. Feedback Requested.
biostars
updated 15 months ago by
Ram
43k • written 11.2 years ago by
Istvan Albert
100k
50
votes
4
replies
9.4k
views
Forum:
How to add images to a Biostars post
how-to
15 months ago by
Ram
43k
50
votes
8
replies
9.6k
views
6 follow
Forum:
Encode Commentary From Dan Graur
encode
updated 14 months ago by
Ram
43k • written 11.2 years ago by
Damian Kao
16k
49
votes
27
replies
7.4k
views
10 follow
Forum:
Possible augmented reality tools for bioinformatics and current problems
visualization
3D
augmented-reality
updated 13 months ago by
Ram
43k • written 8.6 years ago by
Peter Leontev
▴ 90
49
votes
36
replies
8.7k
views
11 follow
Forum:
New features and bug fixes for Biostar to work on during Google Summer of Code
meta
biostars
gsoc
updated 15 months ago by
Ram
43k • written 10.0 years ago by
Paolo
▴ 110
49
votes
20
replies
2.1k
views
10 follow
Forum:
First experiences matter
first-time
tolerance
updated 4 months ago by
Michael Love
★ 2.6k • written 4 months ago by
Mensur Dlakic
★ 27k
49
votes
19
replies
7.3k
views
13 follow
Forum:
Why Are There No Proteomics Questions In Biostar?
proteomics
biostars
updated 15 months ago by
Ram
43k • written 13.5 years ago by
Jdnavarro
▴ 410
48
votes
38
replies
17k
views
8 follow
Forum:
Eukaryotic Genome Annotation in 2016
software
genome
annotation
updated 13 months ago by
Ram
43k • written 8.2 years ago by
Eric Normandeau
11k
47
votes
37
replies
8.8k
views
12 follow
Forum:
The Organisation Of Really Contrived Acronyms (Orca)
acronyms
updated 14 months ago by
Ram
43k • written 10.7 years ago by
Niallhaslam
2.3k
47
votes
19
replies
14k
views
10 follow
Forum:
Is Software Development a key part of Bioinformatics?
Software-Development
updated 21 months ago by
Ram
43k • written 9.4 years ago by
xinuke
▴ 70
47
votes
14
replies
5.2k
views
Forum:
Was FASTA ever popular?
FASTA
alignment
updated 13 months ago by
Ram
43k • written 7.6 years ago by
John
13k
47
votes
30
replies
4.4k
views
10 follow
Forum:
Bioinformatics software distribution
software
updated 12 months ago by
Ram
43k • written 7.2 years ago by
Petr Ponomarenko
★ 2.8k
47
votes
11
replies
4.2k
views
Forum:
What Operating System Are You Using For Bioinformatic Work?
linux
windows
updated 14 months ago by
Ram
43k • written 10.5 years ago by
Eric Normandeau
11k
47
votes
7
replies
3.9k
views
7 follow
Forum:
Would There Be Interest In A 'Next-Gen Sequencing' Stackexchange Site?
meta
next-gen
updated 14 months ago by
Ram
43k • written 11.5 years ago by
14134125465346445
★ 3.6k
1,000 results • Page
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Recent Votes
A: Peaks And Nearby Genes
Answer: How to download dbSNP153 vcf files in hg19/GRCH37 version
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Produce PCA bi-plot for 1000 Genomes Phase III - Version 2
Answer: TFs and Gene databases
A: Is there a software that can compare phylogenetic trees to each othe (face to fa
Comment: Differentially Expressed Genes between two conditions (scRNA, single GEO dataset
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Recent Replies
Comment: How to handle duplicated genes in TCGA data?
by
Ngrin
• 0
Thanks @txema.heredia.The tool I am going to use only accepts gene symbols. This is the reason. So I cannot use ENS IDs.
Answer: Design for complex RNA-Seq experiment using Deseq2
by
swbarnes2
14k
This is a rather small experiment, I don't know that you can establish a meaningful baseline for each patient with a single pre sample, and…
Comment: GG Sankey plot
by
LauferVA
4.2k
@bk11 i changed this comment to an answer. if you disagree please let me know. thanks for sharing your knowledge. VAL
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
Thanks for the input. Unfortunately, that didn't help either. I appreciate any other tips. Thank you
Answer: GG Sankey plot
by
bk11
★ 2.5k
You need to change your data table into a 'long' format. You can do something like this- GOs_childs_recursive <- GOs_childs_recursive …
Answer: Trimming tool
by
ntsopoul
▴ 60
I use Trim Galore which automatically recognizes adaptors. https://github.com/FelixKrueger/TrimGalore Here is the script I am using for…
Answer: Trimming tool
by
GenoMax
142k
There are plenty. `bbduk.sh` from BBMap suite (https://jgi.doe.gov/data-and-tools/software-tools/bbtools/bb-tools-user-guide/bbduk-guide/ )…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
bk11
★ 2.5k
Please check out [in this link.][1] [1]: https://github.com/jokergoo/ComplexHeatmap/issues/349
Comment: Reconstruction of locus, order contigs
by
dthorbur
★ 2.0k
[Here](https://www.biostars.org/p/9544689/) is a forum post that may answer your question.
Comment: how to treat the replicates while performing WGCNA
by
andres.firrincieli
3.6k
> 1) I do not want to merge the MEs rather I asked about replicates, as > some replicates of same sample are showing different behavior for…
Comment: How to systematically check if a bam file is truncated
by
alanh
▴ 170
For more details about what `samtools quickcheck` actually checks for, add a few `-v`'s to the command line. $ samtools quickcheck -…
Comment: How to handle duplicated genes in TCGA data?
by
Zhenyu Zhang
★ 1.2k
Second what is said above, ensembl_id is the unique identifier. As a good bioinformatics habit, always use unique identifier for your anal…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
• 0
It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
Ram
43k
Yes. The solution to most things with ComplexHeatmap is to play around with parameters.
Comment: Reconstruction of locus, order contigs
by
BATMAN
• 0
I do not want to re-annotate the genome. I ask if there is a way to extract the region aligned with the mauve, in .gbk format.
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