Convert Bisulfite Methylation data Genomic Position to Probes id (CpG)
1 answer
If you are talking about Illumina CpG probe ID, just download EPIC/450k/27k manifest from Bioconductor and match chromosome and position.
library(IlluminaHumanMethylation450kanno.ilmn12.hg19)
data("IlluminaHumanMethylation450kanno.ilmn12.hg19")
data(Locations)
loc450k=data.frame(Locations)
loc450k=data.frame(getAnnotation(IlluminaHumanMethylation450kanno.ilmn12.hg19))
library(IlluminaHumanMethylationEPICanno.ilm10b4.hg19)
data("IlluminaHumanMethylationEPICanno.ilm10b4.hg19")
data(Locations)
locEPIC=data.frame(Locations)
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