Hi all,

What is a good software to create heatmaps of bisulfite sequencing data around some genomic feature? deepTools does not work for us in this case (probably methylation is too sparse data for deepTools).

We have a table with methylation values per each CpG, can converts it to some other format if needed. Ideally we would like to avoid programming from scratch in this case. What would you recommend to use?

Thanks!