PDB to FASTA
I have many pdb files I want their fasta files.
python code to convert a large number of PDB files to fasta
• 4,292 views
•
link
updated
by
Pierre Lindenbaum
•
written
by
devhimd •
•
written
by
devhimd •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Generating a consensus sequence of a large number of amino acid sequences in python
written by unicorn2kang •
-
SABDAB Blast database
written by Ryan •
-
Splitting several PDB files into chains and save as separate files
written by Jonathan Lefebre •
-
gff file
written by devhimd •
-
PDB id to DSSP
written by amir_zarghami_13 •
-
Calculating p-distance for multiple fast files
written by Miguy •
-
metabolite mapping - from PDB ligand to KEGG
written by bioraghu.iisc •
-
Convert .ab1/.abi sequence file to FASTA?
written by cossio •
-
retrieving fasta files from pdb, code
written by fareehakanwal90 •
-
Selenocysteine In Pdb File
written by alvieirajr •
You can adapt this code to make it work with multiple input: to extract fasta file from PDB and obtain the content of file only as protein sequence
i have tried but it was not working
What have you tried exactly and why didn't it work ?
I have an list of 10000 PDB files and I want their respective fasta files