Calculating p-distance for multiple fast files
Hi, I have over 3000 fasta alignment files, I want to calculate the p-distance for each fasta file and print the results in a new text file. I have been using python and perl scripts I've found online but none of them can handle this large number files and errors out with the message "Memory error". Does anyone know of program or script that could handle this many fasta files. Thank you.
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
End to End Solution for Multiple Sequence Alignment on Fasta Files in Python
written by sanfrancisco8101 •
-
Writing lengths of fasta sequences to another file
written by Hau •
-
Tajima-Nei Distance estimate with BioPerl
written by mauricio.1313 •
-
MEGA X ERROR MUSCLE Log file did not end properly
written by geshapiro01 •
-
Extract sequences consecutively from a large fasta files and save in new fasta files
written by Kumar
-
perl or the other scripts converting text file
written by nakanomasayuki265 •
-
In this Python script I want to save result of print(traj_rmsd) in an output.xvg file. I am unable…
written by naveen100787 •
-
where to find detailed description and working examples of Python regular expressions?
written by natasha.sernova
-
Emboss Cons for getting consensus sequence for many files, not just one
written by roblogan6 •
-
Generating Codon Usage
written by Arvalon •
If you just need one p-distance per fasta file, why can't you just read them one by one and compute the distance ?
That means I would have to type in the command three thousand times, each time for each fast file. Not very time efficient. Thanks
What about a loop?