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Jonathan Lefebre
Jonathan Lefebre
Reputation:
70
Joined:
5.1 years ago
Last seen:
1.7 years ago
Location:
Austria

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Latest posts by user
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Comment: Comment: Jensen-Shannon Divergence (Capra and Singh, 2007) scored with substitution matri
written by Jonathan Lefebre • Jonathan Lefebre
0 votes
2 replies
1.5K views
Jensen-Shannon Divergence (Capra and Singh, 2007) scored with substitution matrix for conservation score
multiple-sequence-alignment conservation
updated by Ram Ram • written by Jonathan Lefebre • Jonathan Lefebre
0 votes
0 replies
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Answer: Answer: Need help using Biopython
written by Jonathan Lefebre • Jonathan Lefebre
1 vote
0 replies
0 views
Comment: Comment: Getting Pairwise Sequence Alignment Score With Biopython
written by Jonathan Lefebre • Jonathan Lefebre
1 vote
1 reply
0 views
Answer: Answer: Getting Pairwise Sequence Alignment Score With Biopython
written by Jonathan Lefebre • Jonathan Lefebre
1 vote
0 replies
868 views
Considering gaps in calculating conservation score from MSA
multiple alignment sequence conservation python
written by Jonathan Lefebre • Jonathan Lefebre
1 vote
2 replies
2.1K views
Filtering AA sequences of PDB structures by sequence identity
identity python sequence
updated by Mensur Dlakic Mensur Dlakic • written by Jonathan Lefebre • Jonathan Lefebre
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0 replies
0 views
Comment: Comment: Splitting several PDB files into chains and save as separate files
written by Jonathan Lefebre • Jonathan Lefebre
1 vote
4 replies
6.8K views
Splitting several PDB files into chains and save as separate files
biology python pdb structural biopython
updated by Wayne Wayne • written by Jonathan Lefebre • Jonathan Lefebre
0 votes
1 reply
0 views
Comment: Comment: Iterating over several PDB files in ProDy module
written by Jonathan Lefebre • Jonathan Lefebre
1 vote
4 replies
2.8K views
Iterating over several PDB files in ProDy module
python iteration prody
updated by Wayne Wayne • written by Jonathan Lefebre • Jonathan Lefebre
0 votes
2 replies
2.2K views
Filtering MSA by similiarity to a consensus sequence/motif
biopython motif multiple alignment msa python sequence search
updated by Joe Joe • written by Jonathan Lefebre • Jonathan Lefebre
0 votes
1 reply
1.2K views
Is reclustering of a cluster obtained from hierarchical clustering "allowed"?
analysis cluster hierarchical clustering
updated by German.M.Demidov German.M.Demidov • written by Jonathan Lefebre • Jonathan Lefebre
0 votes
1 reply
1.2K views
Retrieving Clusters from Clustermatrix, obtained with Hierarchical Clustering
seaborn python hierarchical clustering
updated by zorbax zorbax • written by Jonathan Lefebre • Jonathan Lefebre
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1 reply
0 views
Answer: Answer: Measuring pairwise distances between residues/atoms in structural alignment of p
written by Jonathan Lefebre • Jonathan Lefebre
0 votes
0 replies
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Comment: Comment: Measuring pairwise distances between residues/atoms in structural alignment of p
written by Jonathan Lefebre • Jonathan Lefebre
1 vote
6 replies
3.7K views
Measuring pairwise distances between residues/atoms in structural alignment of protein family
biopython protein alignment distance pairwise
updated by Joe Joe • written by Jonathan Lefebre • Jonathan Lefebre
0 votes
0 replies
840 views
Measuring pairwise distances between pockets in structural alignment
biopython protein alignment distance pairwise
written by Jonathan Lefebre • Jonathan Lefebre
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