metabolite mapping - from PDB ligand to KEGG
Dear all
I am having some problem in mapping many of my PDB Ligands (Hetero ID for pdb ligands) to KEGG IDs or Chebi. As i have a large number of ligands, i want in an automated way of the mapped ligands in either KEGG or HMDB/ChEBI.
I found mapping between cheEBI and KEGG, not for PDB Hetero code to KEGG ID. Is there any direct mapping list available?
Pls. suggest
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bioraghu.iisc •
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have you tried biodbnet db2db??
PDB Id Ligand Names SIA sialic acid ATP adenosine triphosphate GLU alpha glucose BTN Biotin HEM Heme
Let's say I have these ligands..i want the corresponding KEGG ID, if found.
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