I am working with interchromosomal Hi-C interaction data and need to extract a matrix from a .hic file using Juicer Tools (v2.13.06). My goal is …

I have over 1Billion valid pairs from one cell type and 1 Billion from another cell type. I want to run differential loops and TADs …

Hi, I have a Hi-C hic file associated with the HG19 genome. How can I convert it to HG38? I have looked at Juicer Tools …

I would like to know how can I convert my HiC contact matrices from .txt format to .h5.

I am trying to convert .txt files of my sparse matrix into .cmap format. How should I indicate xlabel of my intrachromosomal matrix in my …

I have downloaded .hic files from a repisotry, which gives me one merged .hic file of two or more replicates of the same sample. Now, …

Hello everyone! I new here. Actually I downloaded a huge big scRNA-seq .txt file from paper. And I want to analyze this seq data with …

Hi everyone, Are there tools to convert format to transform `.hic` files to `.cool` or `.h5` files in R? Thanks in advance, Chai

I have downloaded some SRA data from NCBI(GEO)? I converted SRA data into fastq format. I want to know how to convert fastq format to …

I have got an IBS (identity by state) distance matrix (in .mibs format with its corresponding IDs file) computed by PLINK from genomic SNPs of …