For my single cell data, I have matrix files from 10X including (`barcodes.tsv.gz`, `features.tsv.gz`, `matrix.mtx.gz`) for all my samples. I am trying to convert them …

Hello everyone, Does anyone know how to interpret heatmap of hi-c data. My data look like this: ![enter image description here][1] And how can I …

I have a bunch of folders containing barcodes.tsv.gz, features.tsv.gz, and matrix.mtx.gz from the Cellranger Count output for a single-cell dataset that was sent to me …

I am trying to convert .txt files of my sparse matrix into .cmap format. How should I indicate xlabel of my intrachromosomal matrix in my …

How to convert chromosome interactrion matrix from .hic file that I have in Nx3 format into NxN using R?

I have downloaded .hic files from a repisotry, which gives me one merged .hic file of two or more replicates of the same sample. Now, …

Hi, I have downloaded .txt files from supplementary data of GEO database . I want to convert these txt format files to fasta format. Can …

Hi everyone, Are there tools to convert format to transform `.hic` files to `.cool` or `.h5` files in R? Thanks in advance, Chai

Hi, I was wondering if it is possible to use hicAggregateContacts with HiC matrices from an external program. I have my in-house normalized matrices and …

I would like to simulate PacBio long reads and then feed these into PacBio algorithms (I think the appropriate one is quiver, but not sure) …