Simulating PacBio long reads and generating consensus
I would like to simulate PacBio long reads and then feed these into PacBio algorithms (I think the appropriate one is quiver, but not sure) to generate a consensus.
I noticed quiver requires data files in h5 format.
What is the best way to proceed? How can I obtain h5 format from my fasta (or fastq) files? Is this even the appropriate workflow?
1 answer
I found https://github.com/PacificBiosciences/blasr/tree/master/simulator which seems to be a "bas.h5" simulator. This might be what I was looking for.
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