new generation sequence primer trimming
how can I trim primers from raw data (fastq) that ı got from new generation sequence technology? which kind of software ı can use for this procedure?
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genetixs •
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I assume you have next generation sequencing (NGS) data. For adapter trimming you can use any of the standard software, be it
bbduk.shfrom BBMap suite,skewer,cutadapt,trimmomatic,fastpand many more. Please use google and the search function to find the manuals for these tools. Most have extensive documentation. The search function can also help you answer common issues with these tools.I have no problem accessing and running programs. I'm having trouble in introducing the primer data in my hand.