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How can I extract SNP from bacterial genome?

HI EveryOne,

I Have a in-house pseudomonas aeruginosa bacterial whole genome data, and now i want to extract SNP from that. How can i do that ? Thanks in advance for any suggestions.

snp next-gen sequencing gene genome
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updated by shubhra.bhattacharya shubhra.bhattacharya • written by k.kathirvel93 k.kathirvel93

1 answer

The question is very broad. It does not give an idea about the objective of snp calling etc. Many online tutorials/papers etc are present in exhaustive fashion about the same.

You can read this for starters though: https://www.ebi.ac.uk/sites/ebi.ac.uk/files/content.ebi.ac.uk/materials/2014/140217_AgriOmics/dan_bolser_snp_calling.pdf

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written by shubhra.bhattacharya shubhra.bhattacharya

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