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gene list to disease ontology ID of each gene

Hello everyone

I have a list of ~ 5000 genes and i want to retrieve disease ontology ID of each gene so that these 5000 genes can be broadly classified into major disease types. i have tried Fundo software and disease ontology (functional annotation of disease ontology), but this maps 900 gene from my list of gene. can anybody suggest that where to get disease ontology ID for each gene. some of gene list is-

GALE RCAN3 PAFAH2 MTFR1L DNAJC16 PLOD1 RPS6KA1 SELENON GPR157

thanks in advance

genome gene software error

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1 answer

Try GeneSCF, it will output results for all your gene list (significant and also non-significant terms) if it matches with the user selected database (gene ontology or KEGG or Reactome).

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