Hello everyone,
I have list of disease ontology id (DOID) and their associated disease term. Now when i look for disease ontology (http://disease-ontology.org/), these are provided in 8 different categories viz disease of cellular proliferation. infectious agent, syndrome etc. Now problem is that i have 10000 DOID and i have to group them in the above listed major categories. I have tried R DOSE package, but still not getting desired result. can anybody tell me that how to do it. I am also providing some DOID with their disease description. DOID:8986 narcolepsy DOID:7233 adult central nervous system embryonal carcinoma DOID:5236 subungual glomus tumor DOID:1934 dysostosis DOID:1086 congenital chromosomal disease DOID:1781 thyroid cancer DOID:0060371 autosomal dominant Parkinson disease 8 DOID:0050262 Acoelomata infectious disease DOID:1572 normal pressure hydrocephalus DOID:0060481 Goldberg-Shprintzen syndrome
Thanks in advance.
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rajesh
1 answer
This is an ontology so you can use any number of tools to query it. In R, you have the ontologyIndex package, part of the ontologyX suite or the bioconductor ontoCAT package. For each term, just find the highest ancestor which is not the ontology root.
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