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From gene list to disease ontology

Dear all , I am working on network based gene expression analysis. Based on network topology measures, I have retrieved hub genes from various sub clusters. For specific biological interpretation, I want to check their importance in terms of their disease specificity. I explored Fundo available at http://fundo.nubic.northwestern.edu/ui/infer which is not working now.

I also tried to use DOSE http://www.bioconductor.org/packages/release/bioc/vignettes/DOSE/inst/doc/semanticAnalysis.html#dosim-function

But there is not any function to change from gene list to disease ontology .

Is there any other way to perform disease ontology based analysis of set of genes ?

Thank you in advance

Archana

fundo disease gene association dose
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written by Omics data mining Omics data mining

Hello archie!

We believe that this post does not fit the main topic of this site.

exact duplicate 302009

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

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written by Pierre Lindenbaum Pierre Lindenbaum

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