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Software for visualising GWAS results

Does anyone know a good GWAS visualisation package that can be integrated into a website? I've seen a website using this one: enter image description here

Which looks brilliant. Does anyone know if that is a downloadable package? I'm looking for a package preferably in javascript. I've seen jbrowse but the graphs aren't that nice looking.

gwas code software package
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updated by shuaichengwang • shuaichengwang • written by entheologist33 • entheologist33

basic feature set of gwasviewer: mouseover and click action for each variant, configurable coloring and score functions, can read from multiple types of data sources of variant data, etc.

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written by cmdcolin cmdcolin

If you don't mind a bit of coding, using R Shiny this should be pretty easy.

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written by zx8754 zx8754

2 answers

Have you seen the gwasviewer plugin for jbrowse? https://github.com/elsiklab/gwasviewer enter image description here

It doesn't by default view all chromosomes at a time but I made a demo of that here for example in this gist

Disclaimer: developed by me

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written by cmdcolin cmdcolin

@entheologist33, The GWAS visualization may comes from ZBrowse. Check out the following links.

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written by shuaichengwang • shuaichengwang

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