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jsneaththompson
jsneaththompson
Reputation:
100 (Trusted)
Joined:
9.4 years ago
Last seen:
6.9 years ago
Latest posts by user
0 votes
8 replies
7.5K views
Keep Format and Individual fields when annotating VCF with VEP
vcf annotation vep variant-calling
updated by MasMarius 1 • | written by jsneaththompson 10
0 votes
0 replies
0 views
Comment: C: hg19 or hg38 for variant calling
written by jsneaththompson 10
0 votes
0 replies
0 views
Comment: C: hg19 or hg38 for variant calling
written by jsneaththompson 10
1 vote
6 replies
3.8K views
hg19 or hg38 for variant calling
genome variant calling assembly
updated by h.mon 3.5K • | written by jsneaththompson 10
0 votes
0 replies
0 views
Comment: C: VarDict Amplicon-Aware Calling with barcoded seq data
written by jsneaththompson 10
0 votes
2 replies
2.8K views
VarDict Amplicon-Aware Calling with barcoded seq data
variant calling next-gen molecular barcode
updated by Biostar 380 • | written by jsneaththompson 10
0 votes
1 reply
0 views
Comment: C: Making UpSetR plot with title
written by jsneaththompson 10
0 votes
0 replies
0 views
Comment: C: Making UpSetR plot with title
written by jsneaththompson 10
0 votes
0 replies
0 views
Comment: C: Making UpSetR plot with title
written by jsneaththompson 10
5 votes
11 replies
9.9K views
Making UpSetR plot with title
plot r upsetr
updated by scott.lohr 2 • | written by jsneaththompson 10
1 vote
0 replies
0 views
Comment: C: Alternatives to Venn Diagrams
written by jsneaththompson 10
0 votes
4 replies
9.6K views
Alternatives to Venn Diagrams
plots venn diagram
updated by andrew.j.skelton73 667 • | written by jsneaththompson 10
2 votes
2 replies
9.3K views
Using GATK's HaplotypeCaller or Mutect2 for somatic cancer samples with no normal panel
variant calling gatk somatic variant
updated by Sean Davis 2.7K • | written by jsneaththompson 10
2 votes
1 reply
0 views
Answer: A: Issues installing Pindel from git
written by jsneaththompson 10
0 votes
6 replies
5.5K views
Issues installing Pindel from git
software error pindel
updated by Edmond 0 • | written by jsneaththompson 10
0 votes
0 replies
1.7K views
Minimum base quality for Pindel
pindel variant calling next-gen
written by jsneaththompson 10
0 votes
0 replies
0 views
Comment: C: Soft-clipping of reads in Amplicon-sequenced data
written by jsneaththompson 10
0 votes
4 replies
4.6K views
Soft-clipping of reads in Amplicon-sequenced data
alignment soft-clipping amplicon
updated by ccagg 6 • | written by jsneaththompson 10
0 votes
1 reply
2.3K views
What do outlined reads in IGV represent?
igv alignment next-gen
updated by lakhujanivijay 594 • | written by jsneaththompson 10
0 votes
1 reply
0 views
Comment: C: Connor Deduplication - AttributeError: 'module' object has no attribute 'Alignme
written by jsneaththompson 10
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