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jsneaththompson
jsneaththompson
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Joined:
9.2 years ago
Last seen:
6.8 years ago
Latest posts by user
0 votes
8 replies
7.4K views
Keep Format and Individual fields when annotating VCF with VEP
vcf annotation vep variant-calling
updated by MasMarius • MasMarius • written by jsneaththompson jsneaththompson
0 votes
0 replies
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Comment: C: hg19 or hg38 for variant calling
written by jsneaththompson jsneaththompson
0 votes
0 replies
0 views
Comment: C: hg19 or hg38 for variant calling
written by jsneaththompson jsneaththompson
1 vote
6 replies
3.7K views
hg19 or hg38 for variant calling
genome variant calling assembly
updated by h.mon h.mon • written by jsneaththompson jsneaththompson
0 votes
0 replies
0 views
Comment: C: VarDict Amplicon-Aware Calling with barcoded seq data
written by jsneaththompson jsneaththompson
0 votes
2 replies
2.8K views
VarDict Amplicon-Aware Calling with barcoded seq data
variant calling next-gen molecular barcode
updated by Biostar Biostar • written by jsneaththompson jsneaththompson
0 votes
1 reply
0 views
Comment: C: Making UpSetR plot with title
written by jsneaththompson jsneaththompson
0 votes
0 replies
0 views
Comment: C: Making UpSetR plot with title
written by jsneaththompson jsneaththompson
0 votes
0 replies
0 views
Comment: C: Making UpSetR plot with title
written by jsneaththompson jsneaththompson
5 votes
11 replies
9.8K views
Making UpSetR plot with title
plot r upsetr
updated by scott.lohr • scott.lohr • written by jsneaththompson jsneaththompson
1 vote
0 replies
0 views
Comment: C: Alternatives to Venn Diagrams
written by jsneaththompson jsneaththompson
0 votes
4 replies
9.5K views
Alternatives to Venn Diagrams
plots venn diagram
updated by andrew.j.skelton73 andrew.j.skelton73 • written by jsneaththompson jsneaththompson
2 votes
2 replies
9.3K views
Using GATK's HaplotypeCaller or Mutect2 for somatic cancer samples with no normal panel
variant calling gatk somatic variant
updated by Sean Davis Sean Davis • written by jsneaththompson jsneaththompson
2 votes
1 reply
0 views
Answer: A: Issues installing Pindel from git
written by jsneaththompson jsneaththompson
0 votes
6 replies
5.5K views
Issues installing Pindel from git
software error pindel
updated by Edmond • Edmond • written by jsneaththompson jsneaththompson
0 votes
0 replies
1.7K views
Minimum base quality for Pindel
pindel variant calling next-gen
written by jsneaththompson jsneaththompson
0 votes
0 replies
0 views
Comment: C: Soft-clipping of reads in Amplicon-sequenced data
written by jsneaththompson jsneaththompson
0 votes
4 replies
4.6K views
Soft-clipping of reads in Amplicon-sequenced data
alignment soft-clipping amplicon
updated by ccagg ccagg • written by jsneaththompson jsneaththompson
0 votes
1 reply
2.3K views
What do outlined reads in IGV represent?
igv alignment next-gen
updated by lakhujanivijay lakhujanivijay • written by jsneaththompson jsneaththompson
0 votes
1 reply
0 views
Comment: C: Connor Deduplication - AttributeError: 'module' object has no attribute 'Alignme
written by jsneaththompson jsneaththompson
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