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ccagg
ccagg
Reputation:
60
Joined:
9.7 years ago
Last seen:
2.1 years ago
Location:
Los Angeles

Bioinformatics postdoc. I am interested in computational genomics and algorithms development.

Latest posts by user
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Comment: Comment: number of homozygotes with phenotype
written by ccagg ccagg
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2 replies
1.4K views
number of homozygotes with phenotype
plink gwas
written by ccagg ccagg
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0 replies
508 views
recessive model in saige
gwas
written by ccagg ccagg
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1 reply
2.8K views
insert size in bam file do not make sense
samtools cfdna
updated by benformatics benformatics • written by ccagg ccagg
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Comment: Comment: BCL2Fastq when I5 index is UMI
written by ccagg ccagg
1 vote
2 replies
3.4K views
BCL2Fastq when I5 index is UMI
umi bcl2fastq demultiplex
written by ccagg ccagg
0 votes
1 reply
1.4K views
Percentage of on target reads in custom capture sequencing
coverage capture sequencing bam
updated by Pierre Lindenbaum Pierre Lindenbaum • written by ccagg ccagg
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1 reply
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Comment: C: background exome gVCFs for haplotype calling
written by ccagg ccagg
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3 replies
1.4K views
background exome gVCFs for haplotype calling
exome gatk
written by ccagg ccagg
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1 reply
1.4K views
Finding shared genotypes between multiple VCF files
vcf snp exome
updated by Pierre Lindenbaum Pierre Lindenbaum • written by ccagg ccagg
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0 replies
1.4K views
differentially methylated bed file from encode
encode methylation wgbs
written by ccagg ccagg
2 votes
6 replies
6.1K views
Combining multiple bedfiles
bed bedtools
updated by Biostar Biostar • written by ccagg ccagg
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Comment: C: test dataset for MinIon algorithm development
written by ccagg ccagg
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1 reply
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Comment: C: test dataset for MinIon algorithm development
written by ccagg ccagg
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7 replies
4.0K views
test dataset for MinIon algorithm development
nanopore sequencing
updated by GenoMax GenoMax • written by ccagg ccagg
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2 replies
3.1K views
low mappability in single cell rna-seq data?
rna-seq contamination alignment
written by ccagg ccagg
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1 reply
1.8K views
more than 28 million methylation sites?
bs-seq methylation cpg bismark
updated by igor igor • written by ccagg ccagg
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0 replies
1.7K views
ENCODE methylation pipeline for command line
encode methylation wgbs
written by ccagg ccagg
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0 replies
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Answer: A: Soft-clipping of reads in Amplicon-sequenced data
written by ccagg ccagg
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0 replies
1.7K views
simulating variants with specific frequency using GATK
gatk vcf
updated by Biostar Biostar • written by ccagg ccagg
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