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Chip-Seq (Transcription Factor) data resources

Is there any other resource out there (beside ENCODE) which has Chip-seq data for various TFs across different cell lines/types ? If you know any study in which they profiled a cell line for various TFs then kindly share this information.

chip-seq transcription factor datasets

2 answers

Not really cell lines, but cell/tissue types: IHEC

All I am able to find in IHEC is ChiP-seq for different histone marks, not for Transcription factors. Can you please share the link of any such experiment from IHEC where they are providing Chip-Seq for a TF and that experiment is not from ENCODE?

You'd need to go here and select "Show non-core assays". Having said that, it looks like the only assays currently available are from Encode.

It means we can get ChiP-seq data for different TFs only in ENCODE, there is no alternate resource providing such information..!

blueprint is for blood cells

http://www.blueprint-epigenome.eu/

No TFs in Blueprint, just histone modifications.

Oh sorry, thanks for clarifying that Emily.

I only found this out last week. I had also assumed they have TFs and stuff.

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