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nancy
nancy
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Joined:
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Last seen:
6.4 years ago
Latest posts by user
0 votes
1 reply
1.3K views
single cell RNA-seq
rna-seq single-cell scrna-seq
updated by jared.andrews07 jared.andrews07 • written by nancy nancy
1 vote
2 replies
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Answer: A: Gene list of Neuronal Markers for TSNE plot
written by nancy nancy
1 vote
1 reply
4.4K views
Transforming RNA-seq data- (tpms) - what is the best practice for dealing with zeros for the purpose of deconvolution?
rna-seq deconvolution tpm cibersort
written by nancy nancy
0 votes
1 reply
1.4K views
RNA-seq data analysis for differential expression of a single gene
rna-seq
updated by JC JC • written by nancy nancy
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1 reply
1.5K views
Are there minimum requirements from a de novo genome assembly for it to be suitably used as a reference for SNP calling?
snp assembly reference genome snp wgs
written by nancy nancy
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1 reply
1.5K views
RNA-seq data analysis to detect dosage effect or proportional increase/decrease in expression across a series
rna-seq deseq2 dosage effect
updated by Biostar Biostar • written by nancy nancy
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0 replies
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Comment: C: How to filter for samples that show good concordance across replicates in DESEQ2
written by nancy nancy
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0 replies
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Comment: C: How to filter for samples that show good concordance across replicates in DESEQ2
written by nancy nancy
0 votes
0 replies
1 view
Comment: C: How to filter for samples that show good concordance across replicates in DESEQ2
updated by zx8754 zx8754 • written by nancy nancy
0 votes
1 reply
1 view
Comment: C: hclust heatmap clustering produce different relationships with fpkm versus rlog
written by nancy nancy
0 votes
1 reply
2.6K views
How to assess extent of cell-type admixtures from bulk RNA-seq data for a single tissue?
deconvolution rna-seq scrna-seq cellmix
updated by BioinfGuru BioinfGuru • written by nancy nancy
0 votes
1 reply
1 view
Comment: C: hclust heatmap clustering produce different relationships with fpkm versus rlog
written by nancy nancy
0 votes
1 reply
1 view
Comment: C: How to filter for samples that show good concordance across replicates in DESEQ2
written by nancy nancy
3 votes
9 replies
5.5K views
How to filter for samples that show good concordance across replicates in DESEQ2 count data from RNA-SEQ?
rna-seq deseq2 replicates prepde.py r
updated by i.sudbery i.sudbery • written by nancy nancy
0 votes
1 reply
1 view
Comment: C: hclust heatmap clustering produce different relationships with fpkm versus rlog
written by nancy nancy
0 votes
9 replies
3.3K views
hclust heatmap clustering produce different relationships with fpkm versus rlog transformed coun
rna-seq heatmap hclust deseq2 prepde.py
updated by Kevin Blighe Kevin Blighe • written by nancy nancy
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0 replies
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Comment: C: 6-bp deletions in RNA-seq data
written by nancy nancy
2 votes
1 reply
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Answer: A: 6-bp deletions in RNA-seq data
written by nancy nancy
0 votes
1 reply
0 views
Comment: A: 6-bp deletions in RNA-seq data
written by nancy nancy
0 votes
0 replies
2.0K views
What measure should be used to calculate fold-change while using Ballgown to compare D.E genes between 2 conditions?
rna-seq hisat2 ballgown stringtie
written by nancy nancy
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