Data resources for Chromatin accessibility (DNAse, FAIRE, ATAC - seq) and Transcriptomics (RNA-seq, expression profilling)

I know following resources which have DNAse-seq and mRNA-seq data for different tissue/cell samples. If you know some other studies or resources, then kindly share that information:

ENCODE (https://www.encodeproject.org/search/?type=Experiment)
Roadmap (http://www.roadmapepigenomics.org/data/tables/all)

chromatin accessibility transcriptomics

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updated 9.6 years ago by apa@stowers

• written 10.4 years ago by Bioinformatist Newbie

1 answer

You are basically looking for a public repository (google "sequencing public repository", for instance)

Here are a few more big ones which handle next-gen sequencing data:

GEO (https://www.ncbi.nlm.nih.gov/geo/)
SRA (https://www.ncbi.nlm.nih.gov/sra)
ArrayExpress (https://www.ebi.ac.uk/arrayexpress/)
ENA (http://www.ebi.ac.uk/ena)
modENCODE (http://www.modencode.org/)

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written 9.6 years ago by apa@stowers

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