MNAse-Seq Dataset for Different Cancer Types · Biostar

This is a test version of Biostars. For the public version, visit https://www.biostars.org.

MNAse-Seq Dataset for Different Cancer Types

Hi Everyone!!

I just needed some information related to TCGA dataset. I was wondering if TCGA has MNAseq dataset for different cancer types? Also While checking the ENCODE website I found two widely used MNAse-seq dataset from two cell lines but they are available for hg19. Would you recommend lifting it over to hg38 because that file is quite large? https://www.encodeproject.org/experiments/ENCSR000CXP/

cancer bigwig mnaseseq

• 942 views • link

updated 3.4 years ago by Ram

• written 5.7 years ago by rohitsatyam102

0 answers

No answers yet.

Log in to answer this question.

More posts like this

Job: Flatiron Research Fellow, Center for Computational Biology
written 3.8 years ago by simonsF.careers

POSITION SUMMARY The Center for Computational Biology (CCB) of the Simons Foundation's Flatiron Institute invites applications for multiple post-doctoral Flatiron Research Fellows (FRF) positions. Applications …
Extracting specific cancer types from MAF (Mutation Annotation Format) files from TCGA(The Cancer G…
written 5.4 years ago by peter •

I am new to bioinformatics therefore, I apologise I have two basic questions. But I have a MAF file. It is mutational information available for …
Tool: SPAR: Web server and scripts for small RNA, short total RNA, miRNA-seq and single-cell small …
written 8.3 years ago by pkuksa •

A web server for interactive analysis and a set of scripts and modules for small RNA-seq, short total RNA-seq, miRNA-seq, single-cell small RNA-seq data processing, …
Job: Data Scientist (Jones Group), Wellcome Trust Sanger Institute , Cambridge, UK
written 9.2 years ago by Recruit

Salary Range: £31,498 to £39,729, plus excellent benefits. The Wellcome Trust Sanger Institute are seeking to recruit a Data Scientist who can facilitate the scientific …
Job: Postdoctoral researchers (Bioinformatics/Cancer Genomics),Memorial Sloan Kettering Cancer Cent…
written 9.9 years ago by weinhold •

We are seeking two motivated postdoctoral researchers to join our lab at Memorial Sloan Kettering Cancer Center in New York City. Our lab specializes in …
Tutorial: Guide to TCGA data
written 10.4 years ago by Jordan Anaya

Guide to TCGA data ================== Hi, I've been working with TCGA data for a couple years now and I am the creator of OncoLnc. In …
Job: Joint Postdoctoral Fellow at University of Washington - Institute for Systems Biology
written 10.8 years ago by raymonnat •

***Contact***: Prof. Ray Monnat (UW) monnat@u.washington.edu Prof. Ilya Shmulevich (ISB) ilya.shmulevich@systemsbiology.org We are recruiting a new computationally-oriented Postdoctoral Fellow to work as part of a …
Large-scale open-source bioinformatics datasets
written 10.9 years ago by Tobias

Of course, as a bioinformatician, I am aware of many large-scale open-source bioinformatics datasets, such as - The ENCODE consortium (www.encodeproject.org, RNA-Seq, ChIP-Seq and so …
Trying to understand the details of an ENCODE project and how to work with it for DNA alignment
written 11.2 years ago by Bilal Akil •

I'm still rather new with bioinformatics and as such I've been trying to establish my own "process" of sorts in regards to finding, understanding and …
Finding significant overlap of mutations in a specific cancer tumors and its reprogrammed clones ac…
written 11.7 years ago by ivivek_ngs

I would like to seek some advice regarding a kind of analysis I am planning to perform with my exome data. I have sequenced data …