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generate .bai files in windows system

Hi Biostars users,

I used to work with samtools installed on my mac in order to generate the .bai files. For some complicated reasons, I have currently an access only to a windows system. Do you have any idea on how I might generate .bai file on a windows pc?

Many thanks in advance,

Best

Kiz

alignment next-gen-sequencing
• 4,162 views • link
updated by Ram Ram • written by Kizuna Kizuna

indexBam() in Rsamtools just worked fine!

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updated by Ram Ram • written by Kizuna Kizuna

1 answer

If windows is your only option you can try http://bow.codeplex.com/releases/view/87911. I have never tried it. I just googled and found it.

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updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey

Did you ever try the asBam() or indexBam() of Rsamtools?

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updated by Ram Ram • written by Kizuna Kizuna

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