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generate .bai files in windows system
2
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3.1 years ago
Kizuna • 780
France, Paris

Hi Biostars users ,

I used to work with samtools installed on my mac in order to generate the .bai files. For some complicated reasons, I have currently an access only to a windows system. Do you have any idea on how I might generate .bai file on a windows pc?

Best

Kiz

1
Entering edit mode

indexBam() in Rsamtools just worked fine !

0
Entering edit mode
21 months ago

If windows is your only option you can try http://bow.codeplex.com/releases/view/87911. I have never tried it. I just googled and found it.

did you ever try the asBam() or indexBam()of Rsamtools ?