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generate .bai files in windows system
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2.7 years ago
Kizuna • 780
France, Paris

Hi Biostars users ,

I used to work with samtools installed on my mac in order to generate the .bai files. For some complicated reasons, I have currently an access only to a windows system. Do you have any idea on how I might generate .bai file on a windows pc?

Many thanks in advance,

Best

Kiz

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indexBam() in ``Rsamtools just worked fine !

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16 months ago
Philadelphia

If windows is your only option you can try http://bow.codeplex.com/releases/view/87911. I have never tried it. I just googled and found it.

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did you ever try the asBam() or indexBam()of Rsamtools ?

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