SimPlot on Mac OS

Hello,

I am currently trying to look at the difference between multiple nucleotide sequences. Since I am on a Mac OS and do not have an .ISO file or anything, I am constrained to use available mac software. Ideally, I am looking for something like this:

< image not found >

The visualization is called a SimPlot (more info on this here) - it is ideal because it gives nucleotide resolution of variation across multiple sequences. It is a Windows only program, and I don't have a Windows system to run on my mac.

Does anyone know of something that could generate a similar plot?

data-analysis r plot sequencing

• 4,447 views • link

updated 4.2 years ago by Ram

• written 11.4 years ago by thorerges •

https://www.parallels.com/

• 0 views • link

written 11.4 years ago by User 59

0 answers

No answers yet.

More posts like this

I'd like to make BSP plot using BEAST
written 6.4 years ago by wldud0915ek •

I'd like to make BSP plot using BEAST My data contained 129 COI sequences, 617 bp of same species. I already read Tutorials, But I …
How can extract nucleotide frequency for position on aligned sequences in clustal omega?
written 9.1 years ago by algas2006 •

hi I am begginer in Bioinformatics and I have a laptop with OS Ubuntu. The question is: How can extract nucleotide frequency for position on …
Identification of a given amino acid sequence in nucleotide sequence
written 10.4 years ago by hana.parizkova •

Hello, I have a set of nucleotide sequences and I need to locate and extract parts of it which are translated into given short amino …
Really Basic Statistics: Expected frequency?
written 10.5 years ago by jth

Hi everyone, I have a question on basic statistics. I feel really bad about asking this but I'm having a brain freeze now. So, I'm …
Weird behaviour of local seqlogo/weblogo 2.8.2
written 10.9 years ago by jth

Hi! For proper HOMER installation, I have downloaded seqlogo 2.8.2. However, when I try to test it, I have only received weird outputs so far. …
Sense/Antisense Gene Knockin Question
written 10.9 years ago by thorerges •

Hi All, I am interested in knocking in a TagRFP in this gene in c. elegans. Sequence below is from Ensembl (http://useast.ensembl.org/Caenorhabditis_elegans/Gene/Sequence?db=core;g=WBGene00001946;r=III:12367474-12369050): <img alt="" src="https://scontent.xx.fbcdn.net/hphotos-xlf1/v/t1.0-9/11988655_10206513275364431_8049045249874055089_n.jpg?oh=114af79390c98e029c6c487d43ec8568&oe=5669C1EA" …
Tool: Avalanche Workbench - Automated & visual data analysis (NCBI eSearch, eLink, eFetch, Get geno…
written 11.3 years ago by BioApps

Last year I posted several small tools. Separated they don't have much value. But now, finally, they started to converge into a unified platform. The …
Plot Sequence Similarity Data
written 11.5 years ago by thorerges •

Hello, I am trying to do two things, I will try to make this as clear as possible. 1\. I have aligned and downloaded about …
Ideas or advise for data visualization that shows genotype and phenotpye relationship
written 12.3 years ago by kevinjspring •

I thought biostars may be a good place to ask this question. I have a large database of similar protein sequences with one to multiple …
Vector Nti Issues When I Try To Save Certain Features
written 14.5 years ago by Anima Mundi

Hello, I am running Vector NTI on a Windows virtual desktop under a Mac OS X Lion machine. When I save a map as a …