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19
votes
11
replies
14k
views
10 follow
How Can We Find The Info For 3'Utr And 5'Utr In Gencode Gtf File?
utr
updated 6 days ago by
cmdcolin
★ 3.8k • written 10.8 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
396
views
Any tool that can give me a list of DNA/RNA aptamers against specific protein as the in vitro SELEX library to screen the sequences?
aptamer
protein
SELEX
9 weeks ago by
J.F.Jiang
▴ 920
0
votes
1
reply
510
views
tumor fraction estimation and fragment size plot using sWGS data
ctDNA
NGS
WGS
updated 5 months ago by
Ram
43k • written 18 months ago by
J.F.Jiang
▴ 920
0
votes
0
replies
601
views
Comment:
Comment: BCR/TCR analysis using target capture sequencing data
11 months ago by
J.F.Jiang
▴ 920
0
votes
2
replies
601
views
BCR/TCR analysis using target capture sequencing data
capture
ngs
TCR
BCR
11 months ago by
J.F.Jiang
▴ 920
0
votes
1
reply
952
views
Comment:
Comment: combine/merge closet variants into one from mutect2
11 months ago by
J.F.Jiang
▴ 920
0
votes
1
reply
952
views
Comment:
Comment: combine/merge closet variants into one from mutect2
11 months ago by
J.F.Jiang
▴ 920
0
votes
5
replies
952
views
combine/merge closet variants into one from mutect2
variants
mutect2
merge
gatk
updated 11 months ago by
Istvan Albert
100k • written 11 months ago by
J.F.Jiang
▴ 920
0
votes
1
reply
709
views
Comment:
Comment: BCL2 fusions not detected in RNA level
12 months ago by
J.F.Jiang
▴ 920
0
votes
4
replies
709
views
BCL2 fusions not detected in RNA level
fusion
RNA
BCL2
updated 12 months ago by
ATpoint
82k • written 12 months ago by
J.F.Jiang
▴ 920
0
votes
0
replies
412
views
multiplex pcr PRIMER
sequence
primer
multiplex
pcr
13 months ago by
J.F.Jiang
▴ 920
0
votes
0
replies
326
views
heterozygosity control from NGS data
heterozygosity
NGS
SNP
20 months ago by
J.F.Jiang
▴ 920
0
votes
1
reply
903
views
Comment:
Comment: tumor fraction estimation for ctDNA panel sequecing data
2.1 years ago by
J.F.Jiang
▴ 920
1
vote
3
replies
903
views
tumor fraction estimation for ctDNA panel sequecing data
fraction
NGS
panel
tumor
ctDNA
updated 2.1 years ago by
markus.riester
▴ 550 • written 2.1 years ago by
J.F.Jiang
▴ 920
0
votes
1
reply
689
views
hgvs annotation from VCF
VCF
HGVS
annotation
updated 2.2 years ago by
cpad0112
21k • written 2.2 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
387
views
any tool to plot the fragment profile for ctDNA samples?
fragment
ctDNA
2.2 years ago by
J.F.Jiang
▴ 920
3
votes
10
replies
8.5k
views
6 follow
GATK HaolotypeCaller takes too much time for variant calling
HaplotypeCaller
GATK
updated 27 days ago by
Ram
43k • written 6.5 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
816
views
genomewide CNV analysis and plot from low pass WGS data
CNV
CNVSEQ
WGS
3.3 years ago by
J.F.Jiang
▴ 920
0
votes
4
replies
997
views
public tools to distinguish germline variants from somatic ones in NGS data without matched normal
germline
somatic
NGS
tumor
updated 3.4 years ago by
Biostar
20 • written 3.4 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
997
views
Comment:
C: public tools to distinguish germline variants from somatic ones in NGS data with
3.4 years ago by
J.F.Jiang
▴ 920
0
votes
1
reply
997
views
Comment:
C: public tools to distinguish germline variants from somatic ones in NGS data with
3.4 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
765
views
best tool to evaluate the CNV status of germline samples using 1x WGS
CNV
WGS
3.5 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
657
views
Max mutation allele frequency against tumor purity
tumor
AF
PURITY
3.7 years ago by
J.F.Jiang
▴ 920
0
votes
1
reply
968
views
Comment:
C: HPV EBV typing from cancer genome data
3.7 years ago by
J.F.Jiang
▴ 920
2
votes
4
replies
968
views
HPV EBV typing from cancer genome data
HPV
EBV
NGS
updated 3.7 years ago by
d-cameron
★ 2.9k • written 3.7 years ago by
J.F.Jiang
▴ 920
32
votes
12
replies
23k
views
9 follow
Bwa Mem Method For Mapping, With Or Without Trimming Reads?
bwa
updated 3.8 years ago by
Biostar
20 • written 10.3 years ago by
J.F.Jiang
▴ 920
0
votes
1
reply
1.0k
views
LOH segment inferring from WES data for germline sample
LOH
WES
4.0 years ago by
J.F.Jiang
▴ 920
1
vote
5
replies
2.2k
views
fusion detection for DNA Sequencing data
fusion
NGS
DNA
updated 4.1 years ago by
d-cameron
★ 2.9k • written 4.1 years ago by
J.F.Jiang
▴ 920
0
votes
1
reply
2.2k
views
Comment:
C: fusion detection for DNA Sequencing data
4.1 years ago by
J.F.Jiang
▴ 920
1
vote
0
replies
2.2k
views
Comment:
C: fusion detection for DNA Sequencing data
4.1 years ago by
J.F.Jiang
▴ 920
1
vote
0
replies
1.5k
views
Comment:
C: CNV analysis for tumor panel
4.1 years ago by
J.F.Jiang
▴ 920
1
vote
1
reply
695
views
looking somatic variants interpreter, AS CKB database
ckb
somatic
interpreter
updated 4.2 years ago by
Kevin Blighe
87k • written 4.3 years ago by
J.F.Jiang
▴ 920
2
votes
5
replies
2.7k
views
remove primer sequences from BAM file
bam
primer
updated 4.3 years ago by
hongen.hugo.xu
• 0 • written 5.7 years ago by
J.F.Jiang
▴ 920
0
votes
2
replies
994
views
convenient tools to collect target mapping metrics
target
mapping
updated 4.3 years ago by
Biostar
20 • written 4.4 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
994
views
Comment:
C: convenient tools to collect target mapping metrics
4.4 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
1.1k
views
calculate MSI STATUS using predefined MSI loci
MSI
msisensor
4.5 years ago by
J.F.Jiang
▴ 920
0
votes
1
reply
23k
views
Comment:
C: Bwa Mem Method For Mapping, With Or Without Trimming Reads?
updated 4.6 years ago by
Ram
43k • written 10.3 years ago by
J.F.Jiang
▴ 920
2
votes
5
replies
1.5k
views
CNV analysis for tumor panel
CNV
updated 4.8 years ago by
Eric T.
★ 2.8k • written 4.8 years ago by
J.F.Jiang
▴ 920
1
vote
5
replies
2.9k
views
amplicon based germline CNV caller
amplicon
germline
CNV
updated 4.8 years ago by
lffu_0032
▴ 90 • written 6.7 years ago by
J.F.Jiang
▴ 920
0
votes
1
reply
1.5k
views
Comment:
A: CNV analysis for tumor panel
4.8 years ago by
J.F.Jiang
▴ 920
0
votes
2
replies
1.4k
views
pairwise calculation of relationship based on selected SNPs with MAF>0.3
relationship
SNP
updated 5.4 years ago by
Biostar
20 • written 6.4 years ago by
J.F.Jiang
▴ 920
3
votes
3
replies
2.2k
views
Simulate genotypes for SNPs, considering MAF and LD structure
genotype
simulation
SNP
MAF
LD
updated 5.5 years ago by
zx8754
11k • written 6.3 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
2.6k
views
Comment:
C: Free Genetic Genealogy Software
5.7 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
2.7k
views
Comment:
C: remove primer sequences from BAM file
5.7 years ago by
J.F.Jiang
▴ 920
0
votes
1
reply
2.7k
views
Comment:
C: remove primer sequences from BAM file
updated 5.7 years ago by
WouterDeCoster
47k • written 5.7 years ago by
J.F.Jiang
▴ 920
0
votes
2
replies
1.8k
views
autosomal ancestry inference
GWAS
ancestry
updated 5.7 years ago by
Kevin Blighe
87k • written 5.7 years ago by
J.F.Jiang
▴ 920
0
votes
1
reply
1.7k
views
how to genotype given SNP alleles from NGS data using freebayes
genotype
NGS
freebayes
updated 6.4 years ago by
ines.sanchezdonoso
• 0 • written 6.6 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
1.7k
views
Comment:
C: extract region bam
6.4 years ago by
J.F.Jiang
▴ 920
0
votes
2
replies
1.7k
views
extract region bam
bam
region
updated 6.4 years ago by
h.mon
35k • written 6.4 years ago by
J.F.Jiang
▴ 920
0
votes
0
replies
1.4k
views
Comment:
C: pairwise calculation of relationship based on selected SNPs with MAF>0.3
6.4 years ago by
J.F.Jiang
▴ 920
273 results • Page
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