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1
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Are raw RNA-seq data available for samples of TCGA-LUAD (TCGA data set) ?
TCGA RNAseq
updated 2.9 years ago by 141k • written 2.9 years ago by ▴ 80
1
vote
2
replies
1.1k
views
Download raw RNA-seq data from TCGA
TCGA RNA-seq
2.9 years ago by qwzhang0601 ▴ 80
1
vote
2
replies
848
views
Remove duplicate reads for bisulfite sequencing reads
DNA methylation remove duplicates
updated 3.3 years ago by 141k • written 3.3 years ago by ▴ 80
0
votes
2
replies
886
views
TCGA raw RNA-Seq data
RNA-Seq TCGA
updated 3.5 years ago by 82k • written 3.5 years ago by ▴ 80
0
votes
2
replies
569
views
merge file according to IDs
sequencing
updated 3.5 years ago by 13k • written 3.5 years ago by ▴ 80
0
votes
2
replies
689
views
sum counts in regions in bed format
sequencing
3.5 years ago by qwzhang0601 ▴ 80
1
vote
1
reply
1.2k
views
align reads to regions with similar sequences
alignment
updated 3.6 years ago by 20 • written 6.0 years ago by ▴ 80
0
votes
0
replies
578
views
RNA-Seq database across rodents
RNA-Seq gene expression
3.8 years ago by qwzhang0601 ▴ 80
10
votes
8
replies
7.8k
views
6 follow
Prepare gene families for CAFE
gene family CAFE
updated 4.4 years ago by ▴ 30 • written 7.2 years ago by ▴ 80
0
votes
2
replies
1.7k
views
alignment with phylogenetic tree
multiple-sequence-alignment phylogenetic-tree
updated 11 months ago by 43k • written 4.7 years ago by ▴ 80
3
votes
4
replies
1.4k
views
obstain 100-way alignment of 100 species for a certain gene
multiple-sequence-alignment 100-way-alignment
updated 11 months ago by 43k • written 4.7 years ago by ▴ 80
1
vote
4
replies
1.5k
views
Validate PCR DNA primers against whole de novel genome
primers in sillico
updated 5.1 years ago by ★ 1.9k • written 5.1 years ago by ▴ 80
12
votes
5
replies
9.6k
views
Repeatmasker, Can't locate Text/Soundex.pm
repeatMasker
updated 5.2 years ago by ▴ 80 • written 6.7 years ago by ▴ 80
0
votes
0
replies
1.0k
views
Design paralog-specific primer for RT-PCR on de novel genome
qRT-PCR Primer
5.3 years ago by qwzhang0601 ▴ 80
1
vote
5
replies
2.3k
views
compare and merge VCF files
VCF genotype
written 5.5 years ago by ▴ 80
0
votes
0
replies
1.5k
views
Compare gene expression in two species
RNA-Seq
5.6 years ago by qwzhang0601 ▴ 80
0
votes
1
reply
2.8k
views
Why no SINEs, LINEs, LTR and DNA elements were found by Repeatmasker
repeatMasker repeats
updated 5.7 years ago by 8.2k • written 6.7 years ago by ▴ 80
0
votes
0
replies
1.1k
views
is there a tool to visualize and compare gene structure of orthologs/paralogs?
visualization ortholog paralog
5.8 years ago by qwzhang0601 ▴ 80
0
votes
3
replies
2.7k
views
read counts for RNA-seq analysis of repeat elements
RNA-Seq Repeats
6.1 years ago by qwzhang0601 ▴ 80
0
votes
2
replies
3.8k
views
install genewise (wise2.4.1) on linux
genewise
updated 6.2 years ago by ★ 2.9k • written 6.2 years ago by ▴ 80
0
votes
1
reply
2.2k
views
find pseudogenes for a new genome annotation
pseudogenes
6.4 years ago by qwzhang0601 ▴ 80
0
votes
3
replies
2.2k
views
choose the results using different parameters for CAFE3.0 (gene family expansion analysis)
CAFE gene family expansion gene family contraction
updated 6.5 years ago by ▴ 150 • written 6.5 years ago by ▴ 80
0
votes
0
replies
1.6k
views
From phylogenetic tree to a time tree
RAxML
6.5 years ago by qwzhang0601 ▴ 80
1
vote
3
replies
2.7k
views
install augustus on MAC
AUGUSTUS
updated 6.6 years ago by 20 • written 7.3 years ago by ▴ 80
0
votes
1
reply
1.9k
views
InterProScan (v5) to get pathway annotation
InterProScan pathway GO
updated 6.6 years ago by 8.5k • written 6.6 years ago by ▴ 80
6
votes
3
replies
2.8k
views
differences between "-title database_title" and "-out database_name" for "makeblastdb" of Blast
Blast makeblastdb
updated 6.7 years ago by 35k • written 6.7 years ago by ▴ 80
0
votes
1
reply
1.4k
views
Compare repeat elelemts among species
repeatmasker repeats
updated 6.7 years ago by 141k • written 6.7 years ago by ▴ 80
0
votes
3
replies
4.5k
views
gffread "Error (GFaSeqGet): end coordinate (76134) cannot be larger than sequence length 76132"
gff Cufflink gffread
updated 6.9 years ago by • 0 • written 7.0 years ago by ▴ 80
0
votes
5
replies
3.5k
views
multiple alignment of multiple genes to generate a phylogenetic tree
phylogenetic tree
updated 7.1 years ago by 21k • written 7.1 years ago by ▴ 80
0
votes
0
replies
1.5k
views
split genes in different scaffold or the same scaffold
genome annotation
7.1 years ago by qwzhang0601 ▴ 80
2
votes
12
replies
5.4k
views
6 follow
BUSCOs running time
BUSCOs Augustus
updated 7.1 years ago by 141k • written 7.1 years ago by ▴ 80
0
votes
0
replies
2.2k
views
on going positive selection analysis using statistics IHS
positive selection population genetics
7.2 years ago by qwzhang0601 ▴ 80
0
votes
1
reply
6.1k
views
nucleotide divergency (--site-pi) in VCF tools
vcftools
updated 7.3 years ago by 20 • written 7.5 years ago by ▴ 80
1
vote
6
replies
5.4k
views
Download gene list associated with GO terms from DAVID
Go
updated 7.3 years ago by ▴ 80 • written 7.4 years ago by ▴ 80
0
votes
0
replies
1.5k
views
copy number of genes
CNV genes
7.4 years ago by qwzhang0601 ▴ 80
0
votes
0
replies
2.7k
views
Reciprocal best hit by blast
blast orthologs
7.5 years ago by qwzhang0601 ▴ 80
1
vote
8
replies
1.8k
views
orthologs between mouse and blind mole rat
blast alignment
7.5 years ago by qwzhang0601 ▴ 80
0
votes
1
reply
1.6k
views
Gene expression in populations
rna-seq populations gene expression
updated 7.5 years ago by ★ 2.2k • written 7.5 years ago by ▴ 80
0
votes
0
replies
1.8k
views
PGDSpider population defintion is different in output file
vcf structure PGDSpider
7.7 years ago by qwzhang0601 ▴ 80
1
vote
4
replies
1.8k
views
Annotate noncoding regions for 1000 genome data
SNP enhancer TFBS
updated 7.8 years ago by ★ 5.2k • written 7.8 years ago by ▴ 80
4
votes
4
replies
2.5k
views
Browser of 1000 genome phase 3 showing allele frequency in each population
SNP genome sequence gene
updated 7.8 years ago by 28k • written 7.8 years ago by ▴ 80
0
votes
2
replies
1.6k
views
positive selection in 1000 genome phase 3
SNP gene selection
7.8 years ago by qwzhang0601 ▴ 80
0
votes
14
replies
5.7k
views
Length of transcripts of mm9
RNA-Seq Biomart FPKM
updated 7.9 years ago by 7.5k • written 7.9 years ago by ▴ 80
0
votes
2
replies
2.1k
views
Normalized non-synonymous variant count
SNP gene
updated 17 months ago by 43k • written 8.8 years ago by ▴ 80
0
votes
1
reply
2.0k
views
Number of shared biological GO terms
GO-terms
updated 22 months ago by 43k • written 9.1 years ago by ▴ 80
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