install genewise (wise2.4.1) on linux
I am trying to install genewise on a linux systerm (Linux 2.6.32-696.6.3.el6.694g0000.x86_64). I have edit the files for known issues (e,g, replace "cc" by "gcc", replace "isnumber" by "isdigit", etc). But still I got the following errors.
[src]$ make all
(cd base ; make CC="gcc" CFLAGS="-c -O3 `glib-config --cflags`" libwisebase.a )
/bin/sh: glib-config: command not found
make[1]: Entering directory `/gs/gsfs0/users/qzhang/tools/wise2.4.1/src/base'
dyc -n Wise2_ -a _api.h -b _api.t -l -D wisememman.dy
make[1]: dyc: Command not found
make[1]: *** [wisememman.c] Error 127
make[1]: Leaving directory `/gs/gsfs0/users/qzhang/tools/wise2.4.1/src/base'
make: *** [realall] Error 2
Under the dyc, I tried to run "make linux" and got the following error.
[dyc]$ make linux
gcc -pthread -c -g -DUNIX -I../base/ -I../base/ dyc.c
gcc -pthread -c -g -DUNIX -I../base/ -I../base/ dyna2.c
gcc -pthread -c -g -DUNIX -I../base/ -I../base/ dynfile.c
gcc -pthread -c -g -DUNIX -I../base/ -I../base/ wisec.c
dyc -l dynafunc.dy
make: dyc: Command not found
make: *** [dynafunc.c] Error 127
Thanks
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The INSTALL files states (edited for brevity):
In the existing tar ball go:
- make all in src directory
- cd into dyc go make dyc
- on linux this will fail. Then go make linux
Now go:
- copy dyc somewhere on your path; setenv WISECONFIGDIR to $wise-cvs-home/wisecfg/
- cd into src in cvs sources
- go "make init"
- now you can go make all.
Perhaps you have not managed to put dyc in your PATH as explained above ?
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Looks like you are missing
glibc-devellibrary. What flavor of linux are you using (RHEL 6)? That looks like an old kernel version.