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kmergenie - Error 1 - It is doesnt work when I typed 'make'

Good morning.

I am trying to use kmergenie v1.6972. But it is broken when I typed "make"

sudo make
g++ -o minia/Pool.o -c minia/Pool.cpp -O4 -pthread  -D_largeint -DKMER_PRECISION=4
make: g++: Command not found
make: *** [minia/Pool.o] Error 127

Firstly I install g++ like the next user told me. But it appears new errors. I have r-base, Rscript installed.

I show the error with make, make check and ./kmergenie

make
g++ -o minia/Pool.o -c minia/Pool.cpp -O4 -pthread  -D_largeint -DKMER_PRECISION=4
g++ -o minia/Bank.o -c minia/Bank.cpp -O4 -pthread  -D_largeint -DKMER_PRECISION=4
In file included from minia/Bank.cpp:21:0:
minia/Bank.h:13:63: fatal error: zlib.h: No such file or directory
 #include <zlib.h> // Added by Pierre Peterlongo on 02/08/2012.
                                                               ^
compilation terminated.
make: *** [minia/Bank.o] Error 1

./kmergenie /home/zhu/File.fq
running histogram estimation
Execution of specialk failed: [Errno 2] No such file or directory
fitting model to histograms to estimate best k
could not predict a best k value
Execution of decide failed (return code 0). If this is a fresh Kmergenie install, try running 'make check'.

make check
g++ -o minia/Bank.o -c minia/Bank.cpp -O4 -pthread  -D_largeint -DKMER_PRECISION=4
In file included from minia/Bank.cpp:21:0:
minia/Bank.h:13:63: fatal error: zlib.h: No such file or directory
 #include <zlib.h> // Added by Pierre Peterlongo on 02/08/2012.
                                                               ^
compilation terminated.
make: *** [minia/Bank.o] Error 1

Regards

kmergenie
• 4,565 views • link
updated by Ram Ram • written by margxenscienculo margxenscienculo

2 answers 

sudo apt-get install g++
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updated by Ram Ram • written by wpwupingwp wpwupingwp

Whenever you see an error such as

XXX.h: No such file or directory

the solution is to search for and install a package usually (but not always) named something like XXX-dev.

So in this case

apt-cache search zlib dev
sudo apt-get install zlib1g-dev

It is always worth doing a Google search with errors like these; they are common and many people will have posted solutions to them.

• 0 views • link
updated by Ram Ram • written by Neilfws Neilfws

Thanks. I dont know the option apt-cache. Regards.

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written by margxenscienculo margxenscienculo

Please accept the solutions that worked for you, so the question is automatically marked as solved by the system.

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written by Ram Ram

It worked. I accepted. I accept. I edited the title of post.

• 0 views • link
written by margxenscienculo margxenscienculo

Under each answer that worked, please click on the check mark. That is how you mark questions as solved, not by editing the title.

• 0 views • link
written by Ram Ram

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