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alignment with phylogenetic tree

I have phylogenetic tree of 100 species, and I also have the multiple sequence alignment file for a gene we are interested in. I wonder whether there is some tool to generate a plot which shows both phylogenetic tree of the 100 species and sequence alignment of the gene from 100 species?

Thanks

multiple-sequence-alignment phylogenetic-tree
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updated by Ram Ram • written by qwzhang0601 qwzhang0601

2 answers

MEGA does both things you want, though it is not my tool of choice for either task. Is there a reason you need to use a single program for both tasks?

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written by Mensur Dlakic Mensur Dlakic

Thank you! Briefly, I want to show multiple sequencing alignment. Some sites under positive selection may evolve differently among different species. So I want to order the sequences according to the phylogenetic tree of those species. Thanks

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written by qwzhang0601 qwzhang0601

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