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0
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2
replies
367
views
blastn Error: mdb_env_open: Cannot allocate memory
NCBI Blast
5 months ago by Mehmet ▴ 820
0
votes
3
replies
2.0k
views
How to generate a Venn diagram from edgeR DEG results?
R edgeR RNA-seq Venn diagram
updated 2.3 years ago by ▴ 80 • written 2.4 years ago by ▴ 820
1
vote
1
reply
835
views
So many variants detected.
gatk4 variants
2.7 years ago by Mehmet ▴ 820
0
votes
0
replies
705
views
no variant remained after GenotypeGVCFs gatk4
GenotypeGVCFs gatk4 variant
2.7 years ago by Mehmet ▴ 820
0
votes
2
replies
2.8k
views
gatk4 python package
conda package python gatk4
2.7 years ago by Mehmet ▴ 820
4
votes
3
replies
927
views
somatic short variant calling from patients having autoimmune disease
somatic immunedisease gatk variant
2.7 years ago by Mehmet ▴ 820
2
votes
1
reply
2.3k
views
illumina adapter specifying and removing using fastp
adapter index illumina fastp fastq
updated 2.7 years ago by 142k • written 2.7 years ago by ▴ 820
2
votes
0
replies
708
views
eggNOG v5 annotation file
eggNOG Annotation
2.8 years ago by Mehmet ▴ 820
0
votes
0
replies
1.6k
views
PolyA selection for transcriptome sequencing
RNA-Seq Assembly sequencing sequence
updated 3.5 years ago by 20 • written 7.2 years ago by ▴ 820
3
votes
8
replies
2.3k
views
Phylogeny based on multiple sequences
genome gene alignment next-gen
updated 3.9 years ago by • 0 • written 8.2 years ago by ▴ 820
1
vote
3
replies
1.2k
views
detection positive selection using multiple copy genes in orthologs
genome sequence gene
updated 4.0 years ago by 35k • written 4.0 years ago by ▴ 820
0
votes
6
replies
2.7k
views
UpsetR intersection numbers
R gene sequencing
4.1 years ago by Mehmet ▴ 820
2
votes
9
replies
1.2k
views
split bed file with specific ranges
sequence genome gene next-gen
updated 4.2 years ago by 161k • written 4.2 years ago by ▴ 820
0
votes
2
replies
2.8k
views
Check contamination in assembly
RNA-Seq genome next-gen
updated 4.3 years ago by ▴ 330 • written 7.5 years ago by ▴ 820
2
votes
1
reply
959
views
SNP data analysis from vcf file to statistical tests.
SNP next-gen genome
updated 4.3 years ago by 87k • written 4.3 years ago by ▴ 820
0
votes
8
replies
1.1k
views
coverage per gene in mapped reads to genome
genome snp alignment gene
4.5 years ago by Mehmet ▴ 820
0
votes
0
replies
4.0k
views
MrBayes nexus file execute problem
sequence alignment next-gen
updated 4.6 years ago by 35k • written 8.2 years ago by ▴ 820
27
votes
38
replies
20k
views
Heatmap based with FPKM values
RNA-Seq next-gen R
updated 5.0 years ago by 20 • written 6.5 years ago by ▴ 820
1
vote
3
replies
980
views
visualize amino acid changes in genes that are positively selected after codeml run
gene alignment genome
updated 5.1 years ago by 35k • written 5.1 years ago by ▴ 820
2
votes
9
replies
2.1k
views
6 follow
RATT annotation transfer tool usage.
Assembly genome sequence gene
updated 5.3 years ago by ▴ 20 • written 6.5 years ago by ▴ 820
1
vote
3
replies
2.1k
views
any tool t make plots from blast output
gene alignment genome
5.6 years ago by Mehmet ▴ 820
0
votes
0
replies
964
views
any tool to show synteny blocks between genome and protein set
genome gene alignment
5.6 years ago by Mehmet ▴ 820
0
votes
0
replies
3.0k
views
Codeml file and output
alignment sequence genome
5.9 years ago by Mehmet ▴ 820
1
vote
12
replies
4.1k
views
dN/dS analysis of genomes
genome sequence alignment
18 months ago by Mehmet ▴ 820
1
vote
2
replies
1.8k
views
BUSCO producing different genome completeness
Assembly gene genome
updated 5.9 years ago by ★ 2.2k • written 5.9 years ago by ▴ 820
1
vote
5
replies
1.6k
views
protein identification in proteome file using bioinformatics tools
genome RNA-Seq alignment gene
updated 6.1 years ago by 20 • written 7.8 years ago by ▴ 820
1
vote
5
replies
1.5k
views
How to add FPKM values in cells of heatmap?
RNA-Seq R rna-seq
updated 6.2 years ago by 7.5k • written 6.2 years ago by ▴ 820
3
votes
1
reply
2.6k
views
How to shown genes in the left side in heatmap2 function
R rna-seq RNA-Seq
updated 6.2 years ago by 87k • written 6.2 years ago by ▴ 820
0
votes
1
reply
922
views
Genome wide transcription binding site in a worm species
RNA-Seq genome sequencing
6.3 years ago by Mehmet ▴ 820
1
vote
4
replies
1.3k
views
Gene set enrichment analyses of different samples of the same species
RNA-Seq genome gene
updated 6.3 years ago by ▴ 90 • written 6.3 years ago by ▴ 820
6
votes
3
replies
6.1k
views
Phylogenetic tree based on orthofinder results
gene genome alignment sequence
updated 6.4 years ago by ▴ 160 • written 7.1 years ago by ▴ 820
3
votes
4
replies
1.8k
views
How to find category names of Gene Ontoloy based on category ID
RNA-Seq gene rna-seq
updated 6.4 years ago by 161k • written 6.4 years ago by ▴ 820
4
votes
6
replies
23k
views
How to order columns of heatmap as they are in matrix data
RNA-Seq R rna-seq
6.4 years ago by Mehmet ▴ 820
36
votes
37
replies
17k
views
6 follow
How to cluster genes in heatmap
RNA-Seq R gene
updated 6.4 years ago by 43k • written 6.4 years ago by ▴ 820
3
votes
1
reply
2.0k
views
MDS plot based on FPKM values in RNA-seq data
RNA-Seq R gene
6.4 years ago by Mehmet ▴ 820
5
votes
14
replies
4.3k
views
How to generate corresponding embl file with gff and fasta file of each scaffold in an assembly.
Assembly genome sequence gene
updated 6.5 years ago by 8.6k • written 6.5 years ago by ▴ 820
6
votes
21
replies
2.5k
views
how to split a big embl files based on IDs
sequence gene Assembly
updated 6.5 years ago by 21k • written 6.5 years ago by ▴ 820
0
votes
0
replies
1.7k
views
RATT tool error
Assembly genome sequence alignment
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 820
0
votes
1
reply
2.1k
views
RATT: annotation transfer tool
Assembly genome alignment sequence
updated 6.5 years ago by 5.3k • written 6.5 years ago by ▴ 820
1
vote
1
reply
4.6k
views
reorder sequences in fasta file based on ids from different file
sequence gene genome
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 820
0
votes
0
replies
1.9k
views
Assembly comparisons and reordering scaffolds
Assembly genome sequence alignment
6.6 years ago by Mehmet ▴ 820
10
votes
10
replies
5.5k
views
extract sequences based on ids file
sequence gene genome
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 820
2
votes
3
replies
1.7k
views
Sorted scaffolds of a draft genome according to a reference genome
Assembly alignment sequence genome
6.6 years ago by Mehmet ▴ 820
1
vote
1
reply
1.1k
views
how to show geographical relationship of contigs from the two assemblies
Assembly sequencing alignment gene
updated 6.6 years ago by 35k • written 6.6 years ago by ▴ 820
1
vote
1
reply
1.7k
views
a script to be used with qsub command
Assembly next-gen alignment
updated 6.7 years ago by 142k • written 6.7 years ago by ▴ 820
0
votes
5
replies
1.3k
views
Low sequence similarity between two samples of the same species
gene sequencing sequence Assembly alignment
updated 7.0 years ago by 35k • written 7.0 years ago by ▴ 820
0
votes
2
replies
1.6k
views
clustering sequences in two different assemblies to find similarities based on sequence
gene sequence alignment
updated 7.1 years ago by • 0 • written 7.1 years ago by ▴ 820
2
votes
8
replies
5.0k
views
Augustus training and artemis
Assembly genome gene alignment
updated 2.1 years ago by 43k • written 9.3 years ago by ▴ 820
1
vote
3
replies
3.2k
views
The MCL tool instal: There is nothing to do for all mcl installation
software error genome sequence
7.1 years ago by Mehmet ▴ 820
0
votes
0
replies
1.9k
views
A Heatmap based on RPKM values of log2fold change?
RNA-Seq R gene rna-seq
7.3 years ago by Mehmet ▴ 820
90 results • Page 1 of 2
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