Genome wide transcription binding site in a worm species

Question

[Mehmet]

Dear All,

I searched in the internet and I could not find a proper way to follow steps to find transcription binding sites using genome and/or RNA-seq data.

I have genome and RNA-seq data (also Differentially expressed gene list) of a worm species, and I want to find transcription binding sites of this species using sequences.

Most tool uses gene names, but I need to use amino acid sequences.

Is there a way to do this?

Thank you.

[Santosh Anand]

See https://www.nature.com/articles/nprot.2008.97

http://www.rsat.eu/