ChIP data analysis high binding sites

I have ChIP-seq data and I have mapped it to the reference genome using Bowtie-2. How to find the genomic region that have high binding sites for histone in ChIP data? Which tool should I use to find the binding sites?

chip-seq

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written 10.1 years ago by s.singh •

see here for peak calling https://github.com/crazyhottommy/ChIP-seq-analysis#peak-calling

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written 10.1 years ago by Ming Tommy Tang

This is best resource for ChIPseq data analysis by Tommy Tang

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written 10.1 years ago by Mike

Thanks !! It was a great help :)

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written 10.0 years ago by s.singh •

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