updated 3 days ago by
cwwong13
▴
40
•
written 6.7 years ago by
lessismore
★
1.3k
40
votes
10
replies
42k
views
8 follow
28
votes
28
replies
34k
views
11 follow
updated 12 hours ago by
thomas.heigl.ibk
•
0
•
written 12.8 years ago by
Bioscientist
★
1.7k
19
votes
11
replies
14k
views
10 follow
10
votes
6
replies
9.9k
views
6 follow
updated 6 days ago by
Antonio R. Franco
★
5.1k
•
written 6.0 years ago by
williamsbrian5064
▴
510
3
votes
8
replies
6.5k
views
7 follow
updated 11 hours ago by
Sd
•
0
•
written 5.1 years ago by
Nicolas Rosewick
11k
4
votes
6
replies
3.8k
views
updated 2 days ago by
Andres
▴
20
•
written 9.6 years ago by
hermathena
▴
40
1
vote
6
replies
2.8k
views
updated 3 days ago by
dimpleadiwal050896
•
0
•
written 4.9 years ago by
ggman
▴
90
2
votes
4
replies
2.6k
views
0
votes
9
replies
2.5k
views
6 follow
1
vote
14
replies
2.3k
views
updated 9 hours ago by
GenoMax
142k
•
written 4.5 years ago by
Swimming bird
▴
20
4
votes
9
replies
2.1k
views
3 days ago by
anna
▴
20
3
votes
6
replies
2.0k
views
7 follow
38
votes
24
replies
1.9k
views
10 follow
2
votes
7
replies
1.3k
views
6 follow
updated 4 days ago by
Gordon Smyth
★
7.1k
•
written 8 months ago by
Calum
▴
10
1
vote
4
replies
1.0k
views
8
votes
16
replies
936
views
2
votes
5
replies
927
views
2
votes
11
replies
893
views
updated 3 days ago by
jkbonfield
★
1.2k
•
written 15 days ago by
me
•
0
0
votes
1
reply
761
views
0
votes
1
reply
747
views
0
votes
3
replies
730
views
5
votes
16
replies
692
views
3 days ago by
Ruqaiya
•
0
4
votes
7
replies
684
views
7 follow
updated 6 days ago by
dsull
★
5.9k
•
written 10 days ago by
qudrat.nii
▴
10
4
votes
8
replies
646
views
0
votes
2
replies
621
views
updated 3 hours ago by
clairechung112
•
0
•
written 23 months ago by
amahdi779
•
0
4
votes
7
replies
575
views
3 days ago by
e.r.zakiev
▴
210
0
votes
0
replies
565
views
0
votes
1
reply
560
views
0
votes
1
reply
515
views
updated 3 hours ago by
clairechung112
•
0
•
written 2.2 years ago by
Bogdan
★
1.4k
5
votes
6
replies
493
views
0
votes
1
reply
492
views
updated 2 days ago by
Ram
43k
•
written 2 days ago by
Dr Huma Naz
•
0
0
votes
10
replies
489
views
1
vote
7
replies
487
views
updated 3 days ago by
bk11
★
2.4k
•
written 7 days ago by
starswillfade
▴
10
0
votes
7
replies
469
views
2
votes
5
replies
450
views
4 days ago by
ashaneev07
▴
20
0
votes
1
reply
449
views
1
vote
8
replies
442
views
2 days ago by
marco.barr
▴
90
4
votes
4
replies
442
views
updated 5 days ago by
BioinfGuru
★
1.7k
•
written 8 days ago by
Ming Tommy Tang
★
3.9k
0
votes
8
replies
424
views
9
votes
10
replies
421
views
6 follow
updated 14 hours ago by
Zamin Iqbal
▴
20
•
written 1 day ago by
nicole.kavanagh
•
0
0
votes
5
replies
402
views
1
vote
4
replies
386
views
3 days ago by
hagl
▴
10
1
vote
3
replies
381
views
updated 4 days ago by
Mensur Dlakic
★
27k
•
written 6 days ago by
O.rka
▴
710
0
votes
3
replies
380
views
2 days ago by
Assa Yeroslaviz
★
1.8k
1
vote
3
replies
373
views
3
votes
2
replies
365
views
0
votes
5
replies
364
views
updated 5 days ago by
Istvan Albert
100k
•
written 8 days ago by
sehriban.buyukkilic
▴
10
4
votes
3
replies
360
views
updated 5 days ago by
Arup Ghosh
3.2k
•
written 6 days ago by
chaco001
▴
40
2
votes
3
replies
350
views
updated 6 days ago by
dsull
★
5.9k
•
written 23 days ago by
javanokendo
▴
60
Recent Votes
Recent Locations •
All
United States, 3 minutes ago
Italy, 3 minutes ago
India, 5 minutes ago
Israel, 7 minutes ago
Russia, 8 minutes ago
India, 8 minutes ago
India, 13 minutes ago
Recent Awards •
All
Popular Question to
kuttibiotech2009
▴
30
Popular Question to
analyst
▴
30
Popular Question to
Shicheng Guo
★
9.4k
Popular Question to
Sasha
▴
840
Popular Question to
Buffo
★
2.4k
Popular Question to
yvonnehhe
•
0
Popular Question to
curious
▴
750
Recent Replies
Comment: HOMER on AWS
by
clairechung112
•
0
Hi. I guess it is solved by now, but as I did not find the answer immediately online, here is the answer I posted on a relevant question: h…
Answer: homer not configured properly
by
clairechung112
•
0
A late reply, but I just solved exactly the same error upon a request in the team. Please see if it helps in case anyone meets the same err…
Comment: Spike-in control found in raw reads (16S amplicon seq) but not picked up by DADA
by
Chris Dean
▴
390
Was the spike-in a commercial product, e.g., from Zymo? Can you provide more information about what cells or DNA was spiked into your samp…
Comment: Bedtools merge minimum overlap?
by
Alex Reynolds
35k
Note that, in place of `sort-bed - | uniq -`, you can pass the `--unique` option to `sort-bed`.
The input is not strictly a BED6 file, but…
Comment: Post-imputation plot
by
LChart
3.9k
Imputation takes what? A day or two of compute time? Just re-do it.
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴
40
Thanks. Really appreciate your help with this. This site is such a great resource.
The methods aren't totally clear on how they're gettin…
Comment: How to access TCGA samples that were treated with a specific drug?
by
GenoMax
142k
It is possible that these drugs may not have been directly used in TCGA. Authors could have looked for mutations known to be acted on by th…
Comment: Does comparing two different groups to a common third group introduce bias in th
by
Qroid
▴
40
Are you thinking about a specific scenario? If so, can you provide more info? I think the basic answer is that, yes, your choice of group C…
Answer: Bedtools merge minimum overlap?
by
harold.smith.tarheel
★
4.9k
Bedtools [intersect][1] allows you to specify the fraction of overlap between two BED (or BAM) files using the F/f/r flags. You could split…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Qroid
▴
40
Sorry, I should have been more specific. By "that list" I mean what's populated in the Therapeutic Agents tab when no filters are applied. …
Comment: Bedtools merge minimum overlap?
by
bk11
★
2.4k
Not sure if you wanting to do like this-
cat your_input.bed
chr1 100 200 region1 +
chr1 180 300 regi…
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
If you know what the boundaries of your construct look like then trim the left-end of the read using the tag on that end (`ktrim=l`). Then …
Comment: Extract gRNA sequence using cutadapt
by
gernophil
▴
80
> Not every read in your data is going to match a guide.
That is also true for sure. Let me clarify what I mean. For every read you should…
Answer: VG : No reference-sense paths available in the graph; falling back to generic pa
by
anovak
▴
120
If your GFA has paths in it that are P lines with names that don't include a sample name, contig name, and separators, then those are what …
Comment: Extract gRNA sequence using cutadapt
by
GenoMax
142k
> if you look at a fastq file you should be able to tell for every read definitely, if it has a perfect match for a guide in it and what gu…
Traffic: 2283 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6