updated 1 day ago by
jkbonfield
★
1.2k
•
written 13 days ago by
me
•
0
2
votes
11
replies
856
views
1
vote
10
replies
4.0k
views
13
votes
10
replies
6.4k
views
1
vote
10
replies
961
views
6 days ago by
DKA
▴
40
0
votes
10
replies
450
views
0
votes
10
replies
657
views
29 days ago by
dzisis1986
▴
70
40
votes
10
replies
42k
views
8 follow
updated 1 day ago by
cwwong13
▴
40
•
written 6.7 years ago by
lessismore
★
1.3k
2
votes
10
replies
3.4k
views
6
votes
10
replies
2.3k
views
9
votes
10
replies
6.9k
views
4
votes
10
replies
1.5k
views
9
votes
10
replies
4.4k
views
updated 13 days ago by
Ram
43k
•
written 7.4 years ago by
denalitastic
▴
30
3
votes
10
replies
8.5k
views
6 follow
7
votes
10
replies
2.7k
views
6 follow
6
votes
10
replies
1.7k
views
8
votes
10
replies
727
views
6
votes
10
replies
1.9k
views
1
vote
9
replies
1.2k
views
2
votes
9
replies
563
views
updated 26 days ago by
Pierre Lindenbaum
161k
•
written 27 days ago by
emilydolivo97
▴
10
4
votes
9
replies
2.1k
views
1 day ago by
anna
▴
20
0
votes
9
replies
2.5k
views
6 follow
11
votes
9
replies
11k
views
10 follow
11
votes
9
replies
7.0k
views
0
votes
9
replies
604
views
3
votes
9
replies
478
views
updated 6 days ago by
Istvan Albert
100k
•
written 8 days ago by
Κοσμάς
•
0
0
votes
9
replies
1.2k
views
4
votes
9
replies
2.7k
views
Tool:
CANEapp, a user-friendly application for automated next generation transcriptomic data analysis
written 8.3 years ago by
dvelmeshev
•
0
4
votes
9
replies
585
views
updated 27 days ago by
Ram
43k
•
written 28 days ago by
dalibenam64
•
0
1
vote
9
replies
4.7k
views
2
votes
9
replies
857
views
1
vote
9
replies
546
views
25 days ago by
Assa Yeroslaviz
★
1.8k
3
votes
9
replies
828
views
updated 12 days ago by
Elisabeth Gasteiger
★
2.4k
•
written 12 days ago by
Jacky
•
0
3
votes
8
replies
4.9k
views
6
votes
8
replies
580
views
updated 13 days ago by
dariober
14k
•
written 15 days ago by
manaswiniparija3
▴
40
1
vote
8
replies
700
views
6 follow
5
votes
8
replies
3.7k
views
1
vote
8
replies
398
views
3 hours ago by
marco.barr
▴
80
3
votes
8
replies
4.1k
views
1
vote
8
replies
826
views
updated 5 days ago by
Pierre Lindenbaum
161k
•
written 11 days ago by
Maria
•
0
1
vote
8
replies
3.5k
views
7
votes
8
replies
676
views
8
votes
8
replies
611
views
17
votes
8
replies
13k
views
9 follow
updated 27 days ago by
AshleeThomson
▴
80
•
written 6.1 years ago by
lauren.wahyudi
▴
50
6
votes
8
replies
2.1k
views
updated 22 days ago by
mflab
•
0
•
written 3.9 years ago by
m.sadman.sakib
▴
120
4
votes
8
replies
608
views
7
votes
8
replies
683
views
6 follow
3
votes
8
replies
1.3k
views
0
votes
8
replies
342
views
0
votes
8
replies
562
views
updated 25 days ago by
Michael
54k
•
written 26 days ago by
emilydolivo97
▴
10
Recent Votes
Recent Locations •
All
United States, just now
United States, just now
United States, just now
Oviedo, 1 minute ago
United States, 3 minutes ago
United States, 5 minutes ago
United States, 6 minutes ago
Recent Awards •
All
Popular Question to
Jonathan Yoou
▴
60
Popular Question to
Chris
▴
260
Commentator to
Lluís R.
★
1.2k
Popular Question to
miles.anderson
▴
10
Popular Question to
kamhamea
•
0
Popular Question to
fanglujing
▴
60
Recent Replies
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
GenoMax
141k
Looking at the [code here][1] `bundle_uuid` seems to be related to the submissions to HCA. Samples that ran on multiple lanes seem to have …
Comment: What does it mean single base resolution in sequencing?
by
LauferVA
4.2k
this is very true and increasingly true as time goes forward. thanks for supplementing this post with your own :-)
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
jeffrey.maurer.informatics
•
0
Thank you, but I've already checked out that site to see if I was missing anything and I don't see any answers to my questions there.
Answer: p-value in CIBERSORT
by
Aspire
▴
310
You have not explicitly specified the number of permutations (which are used to calculate the p-value). The default value of the permutatio…
Comment: Telescope issue
by
GenoMax
141k
> CIGAR and query sequence are of different length [W::sam_read1] Parse error at line 9954941
Problem appears to be at that line. Can you …
Comment: What does 'bundle_uuid' refer to in this metadata sheet?
by
GenoMax
141k
SRA Run Selector shows a better view of the metadata: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA761679&o=acc_s%3Aa
Comment: Adjust pvalue in R with different approach give me all different outcome
by
Aspire
▴
310
- p.adjust() is supposed to receive a **numeric vector of p-values**, not a matrix.
- It makes no sense to "adjust" just one p-value, as…
Comment: Downsampling fastq file
by
marco.barr
▴
80
I understood where the problem lies. I discussed with my wet lab colleagues (this is part of a bioinformatician's job...) and by showing th…
Comment: Programmatically retrieving positions of protein active site residues
by
me
▴
760
This question fits in nicely with the [SIB Swiss Institute of Bioinformatics course on Enzyme information in UniProt][1]
[1]: https://w…
Answer: Programmatically retrieving positions of protein active site residues
by
me
▴
760
This can be done via SPARQL at the UniProt.org sparql endpoint
PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#>
PREFIX fald…
Comment: KEGG Pathways
by
Sudip
•
0
No it does not. Do you know of a way that can help me achieve what I want?
Comment: Minimum RAM and Storage requirement for creating PSSM using ncbi-blast-2.2.30+-x
by
GenoMax
141k
UniRef file is 43G compressed so probably will become ~60G when uncompressed. You would likely be looking at at least that much +10-20% GB …
Comment: RNAseq one control two conditions, shared and exclusive genes
by
matteo.levorato
•
0
thank you for your comment, but yes running DESeq2 is the starting point.
dds <- DESeqDataSetFromMatrix(countData=RawCounts,
…
Comment: Need help for downloading arabdopsis thaliana reference genome fasta file and gt
by
Ram
43k
Please stop pasting a sentence in the `tags` field. That field is for subject matter keywords. I've fixed your posts this time, please be m…
Traffic: 2293 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6