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mmitra
mmitra
Reputation:
60
Joined:
10.9 years ago
Last seen:
1.4 years ago
Location:
Los Angeles, United States

I am a bench scientist who previously worked in HIV field and now doing cancer-related research. I am very interested in bioinformatics especially computational analysis related to gene regulation in cancer.

Latest posts by user
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Comment: Comment: Question about aggregating p values from different DE analysis methods for the s
written by mmitra • mmitra
2 votes
2 replies
2.1K views
Question about aggregating p values from different DE analysis methods for the same RNA-seq dataset
fisher-test p-value rna-seq
written by mmitra • mmitra
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Comment: Comment: Batch effect correction & normalization after training/test split for gene expre
written by mmitra • mmitra
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Comment: Comment: Retrieve transcription factors from gene set using biomaRt
written by mmitra • mmitra
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0 replies
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Comment: Comment: Batch effect correction & normalization after training/test split for gene expre
written by mmitra • mmitra
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0 replies
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Comment: Comment: Batch effect correction & normalization after training/test split for gene expre
written by mmitra • mmitra
0 votes
5 replies
4.5K views
Batch effect correction & normalization after training/test split for gene expression data
rna-seq batch-effect normalization
updated by Ram Ram • written by mmitra • mmitra
1 vote
0 replies
0 views
Comment: Comment: Feature selection for a binary classifier using mixed cancer type samples
written by mmitra • mmitra
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2 replies
1.7K views
Feature selection for a binary classifier using mixed cancer type samples
genes training-test mixed samples split feature de selection classifier
written by mmitra • mmitra
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0 replies
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Comment: Comment: Differential peak analysis for ATAC-seq using transformed and normalized CPM ma
written by mmitra • mmitra
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3 replies
2.1K views
Differential peak analysis for ATAC-seq using transformed and normalized CPM matrix
atac-seq differential normalization matrix analysis cpm
written by mmitra • mmitra
0 votes
0 replies
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Comment: Comment: Batch effect correction to compare differentially expressed genes across dataset
written by mmitra • mmitra
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0 replies
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Comment: Comment: Batch effect correction to compare differentially expressed genes across dataset
written by mmitra • mmitra
0 votes
1 reply
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Comment: Comment: Batch effect correction to compare differentially expressed genes across dataset
written by mmitra • mmitra
0 votes
10 replies
6.9K views
Batch effect correction to compare differentially expressed genes across datasets
batch batch-effect deseq2 rna-seq
updated by Ram Ram • written by mmitra • mmitra
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0 replies
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Comment: C: Differential gene expression analysis: how different could be the number of samp
written by mmitra • mmitra
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2 replies
3.1K views
Differential gene expression analysis: how different could be the number of samples for the two conditions being compared?
rna-seq deseq2 number of samples
written by mmitra • mmitra
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0 replies
1 view
Comment: C: How to perform lncRNA differential gene expression analysis (unstranded)?
written by mmitra • mmitra
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2 replies
2.6K views
How to perform lncRNA differential gene expression analysis (unstranded)?
rna-seq deseq2 lncrna unstranded lincrnas
updated by JC JC • written by mmitra • mmitra
0 votes
1 reply
1 view
Comment: C: Converting .bowtie files to .sam
written by mmitra • mmitra
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