updated 17 hours ago by
Ram
43k
•
written 6 days ago by
carolofharvest
▴
30
9
votes
9
replies
517
views
4
votes
2
replies
149
views
14 hours ago by
lorena9132
▴
10
3
votes
0
replies
1.1k
views
2 hours ago by
Ibrahim Tanyalcin
★
1.2k
2
votes
3
replies
740
views
updated 20 hours ago by
vjanve
•
0
•
written 7 months ago by
mateomejias
•
0
2
votes
2
replies
181
views
updated 17 hours ago by
Ram
43k
•
written 2 days ago by
carolofharvest
▴
30
2
votes
3
replies
263
views
updated 11 hours ago by
Gordon Smyth
★
7.1k
•
written 1 day ago by
SHN
▴
40
2
votes
7
replies
381
views
updated 5 hours ago by
Zhenyu Zhang
★
1.2k
•
written 2 days ago by
Qroid
▴
40
1
vote
2
replies
1.0k
views
5 hours ago by
Zhenyu Zhang
★
1.2k
1
vote
1
reply
141
views
updated 17 hours ago by
Ram
43k
•
written 2 days ago by
adi.gershon1
•
0
0
votes
0
replies
75
views
0
votes
0
replies
18
views
50 minutes ago by
DGTool
•
0
0
votes
0
replies
76
views
0
votes
0
replies
43
views
0
votes
0
replies
76
views
0
votes
2
replies
166
views
0
votes
0
replies
24
views
2 hours ago by
starswillfade
▴
10
0
votes
1
reply
148
views
0
votes
0
replies
1
view
0
votes
1
reply
132
views
updated 15 hours ago by
Mathew
▴
30
•
written 22 hours ago by
drajangirija
•
0
Recent Locations •
All
Russia, 5 minutes ago
Berlin, 6 minutes ago
United States, 6 minutes ago
Norway, 6 minutes ago
China, 10 minutes ago
France, 11 minutes ago
Saudi Arabia, 14 minutes ago
Recent Awards •
All
Popular Question to
carlopecoraro2
★
2.5k
Popular Question to
Sara
▴
30
Popular Question to
Assa Yeroslaviz
★
1.8k
Popular Question to
Yoosef
▴
60
Popular Question to
Zhenyu Zhang
★
1.2k
Popular Question to
psm
▴
130
Popular Question to
Medhat
9.7k
Recent Replies
Comment: The GDC Legacy Archive is retiring soon.
by
Zhenyu Zhang
★
1.2k
If you are talking about methylation idat files, they were all migrated from legacy to the data portal.
If you are talking about other pl…
Comment: How to access TCGA samples that were treated with a specific drug?
by
Zhenyu Zhang
★
1.2k
These TCGA samples were taken 10 ~ 20 years ago, and there is no way they have been treated by the modern immunotherapy.
Are you sure tha…
Comment: Design matrix Differential expression analysis
by
Gordon Smyth
★
7.1k
> When is it recommended to use the design <- cbind(Intercept=1,Group=c(-1,-1,-1,1,1,1))
It is not recommended. No such code appears anywh…
Comment: GRCh38.gmap file
by
lorena9132
▴
10
Hi Mathew,
The .txt files provided in the link differ from the .gmap files, but after several attempts, I succeeded in generating the .gma…
Answer: GRCh38.gmap file
by
Mathew
▴
30
Hi,
I have spent some time searching for a GRCH38 map file for you. I have found a certain publication that uses a hg38 genetic map file…
Answer: Association study using SNP data
by
Mathew
▴
30
Hi,
You asked three questions so I will attempt to help the best I can
**What should be the optimal GC score cutoff**
It sounds li…
Comment: Design matrix Differential expression analysis
by
SHN
▴
40
Thank you for your explanation. I am working on the cell lines and I am investigating the effect of the treatment on the expression level, …
Answer: Issues with Mixture file when using CIBERSORTx
by
vjanve
•
0
I ran into same issue of "duplicated gene symbol(s)":
1: In CIBERSORTxFractions(sigmatrix = sigmatrix, mixture = mixture, :
22292 dup…
Comment: creating batch colum for batch correction
by
Expert
▴
10
Thank you for your response. These samples were collected from the same patient at different time points(day 0, 8 and 18) and these are ind…
Comment: creating batch colum for batch correction
by
ATpoint
82k
Not sure I follow. Can you first of all describe which comparisons you want to make, pretending there was no batch effect at all. Write dow…
Comment: Segmentation error while using a tool
by
Ruqaiya
•
0
Thank you for the advice, i'll keep that in mind.
Comment: Segmentation error while using a tool
by
Ruqaiya
•
0
I am trying to reproduce some bioinformatics data from a research paper-[this paper][1] as i was asked to work on an MRSA bioinfo project, …
Answer: Segmentation error while using a tool
by
Mensur Dlakic
★
27k
Most likely you didn't do anything wrong. Going by your previous post that you have only 8 GB of RAM, the most likely reason is the lack of…
Comment: Segmentation error while using a tool
by
Thanujay S
•
0
Hey @Ruqaiya!
Can you please give more details on why smalt is opted here?
According to what I can see, the tool has become obsolete! Why …
Traffic: 1382 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6