just now by
Javier
•
0
0
votes
0
replies
1
view
0
votes
0
replies
13
views
0
votes
0
replies
8
views
0
votes
0
replies
11
views
0
votes
0
replies
14
views
0
votes
2
replies
33
views
updated just now by
GenoMax
142k
•
written 1 hour ago by
ahmad.sajad4541
•
0
0
votes
3
replies
80
views
0
votes
0
replies
14
views
2 hours ago by
marco.barr
▴
90
0
votes
0
replies
20
views
2
votes
2
replies
92
views
updated 2 hours ago by
t.montserrat.ayuso
▴
10
•
written 6 hours ago by
carolofharvest
▴
30
7
votes
9
replies
348
views
updated just now by
dsull
★
5.9k
•
written 4 days ago by
carolofharvest
▴
30
0
votes
0
replies
28
views
2 hours ago by
mja
•
0
0
votes
1
reply
63
views
0
votes
0
replies
36
views
1
vote
1
reply
65
views
updated 6 hours ago by
ATpoint
82k
•
written 6 hours ago by
adi.gershon1
•
0
795
votes
167
replies
142k
views
109 follow
updated 3 months ago by
Biostar
2.7k
•
written 7.4 years ago by
Istvan Albert
100k
3
votes
5
replies
149
views
0
votes
5
replies
222
views
6 follow
updated 7 hours ago by
b.contreras.moreira
▴
180
•
written 1 day ago by
JH
•
0
0
votes
3
replies
163
views
0
votes
0
replies
47
views
9 hours ago by
Amos Bairoch
▴
120
1
vote
3
replies
121
views
0
votes
0
replies
66
views
0
votes
2
replies
650
views
updated 12 hours ago by
clairechung112
•
0
•
written 23 months ago by
amahdi779
•
0
1
vote
3
replies
162
views
updated 13 hours ago by
Alex Reynolds
35k
•
written 20 hours ago by
SJP
•
0
0
votes
0
replies
61
views
0
votes
1
reply
107
views
1
vote
3
replies
155
views
updated 19 hours ago by
jared.andrews07
★
16k
•
written 23 hours ago by
yvonneh
▴
10
1
vote
2
replies
131
views
3
votes
8
replies
6.5k
views
7 follow
updated 21 hours ago by
Sd
•
0
•
written 5.1 years ago by
Nicolas Rosewick
11k
0
votes
2
replies
118
views
0
votes
1
reply
144
views
updated 13 hours ago by
Chris Dean
▴
390
•
written 22 hours ago by
sovrappensiero
▴
90
1
vote
2
replies
165
views
2
votes
6
replies
263
views
0
votes
1
reply
465
views
0
votes
1
reply
102
views
updated 20 hours ago by
Mensur Dlakic
★
27k
•
written 1 day ago by
Arun Sai Kumar
•
0
1
vote
1
reply
121
views
1
vote
1
reply
130
views
updated 1 day ago by
jared.andrews07
★
16k
•
written 1 day ago by
Oburah
•
0
0
votes
6
replies
207
views
5
votes
5
replies
216
views
updated 1 day ago by
atharvakarkare14
▴
30
•
written 1 day ago by
Begonia_pavonina
▴
150
1
vote
7
replies
397
views
3
votes
3
replies
234
views
0
votes
0
replies
78
views
0
votes
0
replies
85
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
carlopecoraro2
★
2.5k
0
votes
1
reply
201
views
0
votes
0
replies
106
views
1
vote
1
reply
123
views
updated 1 day ago by
Ram
43k
•
written 1 day ago by
marco.barr
▴
90
0
votes
0
replies
76
views
0
votes
0
replies
87
views
9
votes
10
replies
441
views
6 follow
updated 23 hours ago by
Zamin Iqbal
▴
20
•
written 1 day ago by
nicole.kavanagh
•
0
0
votes
1
reply
262
views
updated 1 day ago by
Scooter
▴
280
•
written 7 days ago by
avocado123
•
0
Recent Votes
Recent Locations •
All
United States, just now
Germany, just now
Whitefish, MT, 1 minute ago
United States, 1 minute ago
Russia, 3 minutes ago
Bangalore, 4 minutes ago
United Kingdom, 5 minutes ago
Recent Awards •
All
Popular Question to
curious
▴
750
Popular Question to
M.
▴
30
Student to
carolofharvest
▴
30
Commentator to
e.r.zakiev
▴
210
Popular Question to
ManuelDB
▴
80
Recent Replies
Comment: High Malat-1 expression in single cell data
by
dsull
★
5.9k
I briefly looked at those genes on a genome browser -- there are a lot of repeat elements in those genes, meaning a lot of counts assigned …
Comment: High Malat-1 expression in single cell data
by
carolofharvest
▴
30
Thank you for sharing.
What are your thoughts on the genes Gm42418, AY036118, and Gm26917? Some articles suggest that clusters with an abu…
Comment: Do I need to go back and filter my long-reads?
by
GenoMax
142k
> I think I will filter the reads ultimately.
If your data was not run and basecalled using the same exact version of pore/software for a…
Comment: Raw counts using stringtie
by
Ram
43k
What is `stringie.sh`? Try `./stringtie.sh -h` and then `more stringtie.sh`.
Comment: Do I need to go back and filter my long-reads?
by
Ram
43k
> I think you should have the right to delete a question you yourself have submitted
If you were to talk to someone, can you make them for…
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
by
dthorbur
★
1.9k
I don't have any experience using `BRAKER2` so I cannot comment, but I would be extra careful about data you find on non-model organisms. T…
Comment: Differential Expression Analysis using DESeq2 in R
by
GenoMax
142k
You can copy and paste your code and then use `101010` button in the edit window to format it as text to keep it monospaced.
For example …
Comment: Same sequencing sample in multiple lanes. How to analyse it?
by
ST
•
0
I guess this could really depend on the "counting" strategy, the library complexity and possible lane biases.
If e.g., EM is used to guide…
Comment: Help with choosing a model species for Augustus for a de novo assembled genome.
by
Vijith
▴
30
Hi dthorbur, thanks for the response. I have run Augustus using Arabidopsis as a species. I would like to know about the suitability of usi…
Comment: How does gene length effect the number of reads mapped
by
dsull
★
5.9k
Alicia Oshlack has done some cool work on this but even the plots in her papers show that TPMs sometimes overcorrect and the relationship i…
Comment: Differential Expression Analysis using DESeq2 in R
by
Erina
•
0
![The below image contains the code and result also.][1]
[1]: /media/images/96562b96-d508-4f67-96d1-7c71aa17
Comment: High Malat-1 expression in single cell data
by
dsull
★
5.9k
My response above was actually partly inspired off of a reading of your paper :)
Comment: Differential Expression Analysis using DESeq2 in R
by
ATpoint
82k
> everything is showing equal in environment section. But when I am checking for equalities, it’s showing False
No idea what this means. P…
Answer: Analysis of intronic reads included scRNA-seq data
by
t.montserrat.ayuso
▴
10
You can calculate the percentage of intronic reads for each cell using the [DropletQC][1] package for R.
In this preprint we discuss th…
Comment: How does gene length effect the number of reads mapped
by
i.sudbery
19k
I did say almost - obviously things are going to get tricky at gene ends - this is why we have the concept of effective length. Its interst…
Traffic: 3060 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6