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2
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2
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271
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Removing adapters in all the RNAseq samples regardless if they have or not, is it correct?
fastqc trimming adapters cutadapt RNAseq
updated 28 days ago by ★ 5.9k • written 28 days ago by ▴ 20
0
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0
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679
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
7 weeks ago by ev97 ▴ 20
0
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1
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679
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
7 weeks ago by ev97 ▴ 20
0
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1
reply
679
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Comment: Comment: Does removal of contaminants in RNAseq data have an impact on downstream analyse
7 weeks ago by ev97 ▴ 20
2
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7
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679
views
Does removal of contaminants in RNAseq data have an impact on downstream analyses?
RNA-seq contamination
updated 7 weeks ago by ▴ 390 • written 7 weeks ago by ▴ 20
1
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0
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593
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Comment: Comment: 1 Bioinformatician position in San Sebastian (Spain)
9 weeks ago by ev97 ▴ 20
1
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3
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593
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Job: 1 Bioinformatician position in San Sebastian (Spain)
postdoc phd proteomics scRNAseq transcriptomics
9 weeks ago by ev97 ▴ 20
0
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0
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414
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
3 months ago by ev97 ▴ 20
0
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1
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414
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Comment: Comment: Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
3 months ago by ev97 ▴ 20
2
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5
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414
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Why do I get DE non-polyadenylated genes in a RNAseq with PoliA library?
lncRNA PoliA DGE RNAseq DESeq2
updated 3 months ago by 19k • written 3 months ago by ▴ 20
0
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1
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374
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Comment: Comment: What do you usually use for QC using DNBseq?
3 months ago by ev97 ▴ 20
1
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3
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374
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What do you usually use for QC using DNBseq?
DNBseq fastqc qc Illumina RNA-seq
updated 3 months ago by 141k • written 3 months ago by ▴ 20
0
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0
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459
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Job: PhD position at CiMUS (Santiago de Compostela, Spain)
transcriptomics PhD RNA-seq Single-Cell
updated 4 months ago by 43k • written 4 months ago by ▴ 20
0
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0
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239
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Having different % aligned reads in RPF and mRNA for TE analysis
RPF Ribo-Seq Translation TE RNA-seq
4 months ago by ev97 ▴ 20
0
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0
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1.3k
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Comment: Comment: DNBseq vs Illumina
9 months ago by ev97 ▴ 20
6
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5
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1.3k
views
DNBseq vs Illumina
DNBseq fastq sequencing Illumina RNA-seq
9 months ago by ev97 ▴ 20
0
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0
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1.3k
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Comment: Comment: DNBseq vs Illumina
9 months ago by ev97 ▴ 20
2
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2
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573
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Are SAM attributes necessary if I only keep the BAM files using STAR?
BAM SAM RNA-seq STAR
updated 9 months ago by 141k • written 9 months ago by ▴ 20
0
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1
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523
views
Comment: Comment: How to check if the total million of reads that I have are the ones that I bough
10 months ago by ev97 ▴ 20
2
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3
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523
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How to check if the total million of reads that I have are the ones that I bought?
fastq RNA-seq
updated 10 months ago by 43k • written 10 months ago by ▴ 20
0
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1
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974
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Comment: Comment: Same GEO Accession, different SRR number, how to download this RNA-seq paired-en
11 months ago by ev97 ▴ 20
2
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3
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974
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Same GEO Accession, different SRR number, how to download this RNA-seq paired-end data?
sra-toolkit fastq RNA-seq SRA
updated 11 months ago by 141k • written 11 months ago by ▴ 20
0
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0
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2.3k
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Comment: Comment: Negative values after batch correction using removeBatchEffect from Limma
21 months ago by ev97 ▴ 20
0
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0
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360
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Adjustment by several variables, sequential adjustment or combine them in a single one?
rnaseq combat-seq batch removeBatchEffect limma
21 months ago by ev97 ▴ 20
0
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0
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452
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How to choose the biological variables if you want to keep all the biological signal from your data when you have to adjust by batch?
rnaseq combat-seq batch removeBatchEffect limma
21 months ago by ev97 ▴ 20
2
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4
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2.3k
views
Negative values after batch correction using removeBatchEffect from Limma
batch limma removeBatchEffect rna-seq batch-effect
updated 15 days ago by 43k • written 21 months ago by ▴ 20
0
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0
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816
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Comment: Comment: What type of normalization does removeBatchEffect function require as the input?
21 months ago by ev97 ▴ 20
1
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2
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816
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What type of normalization does removeBatchEffect function require as the input?
batch limma removeBatchEffect rna-seq batch-effect
updated 15 days ago by 43k • written 21 months ago by ▴ 20
7
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4
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1.4k
views
Is there any journal article to reference removeBatchEffect function from Limma?
batch removebatcheffect limma rna-seq batch-effect
updated 15 days ago by 43k • written 21 months ago by ▴ 20
0
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0
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1.4k
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Comment: Comment: Is there any journal article to reference removeBatchEffect function from Limma?
21 months ago by ev97 ▴ 20
0
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1
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2.4k
views
Comment: Comment: How to adjust by multiple variables using ComBat-Seq?
21 months ago by ev97 ▴ 20
0
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1
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2.4k
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Comment: Comment: How to adjust by multiple variables using ComBat-Seq?
21 months ago by ev97 ▴ 20
3
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6
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2.4k
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How to adjust by multiple variables using ComBat-Seq?
CombatSeq combat rna-seq sva batch-effect
updated 15 days ago by 43k • written 21 months ago by ▴ 20
0
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0
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412
views
How Combat-Seq handles the biological covariables?
combat CombatSeq sva rnaseq
2.2 years ago by ev97 ▴ 20
0
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0
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3.5k
views
Comment: Comment: Is there a manual to understand STAR output files?
3.0 years ago by ev97 ▴ 20
0
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0
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3.5k
views
Comment: Comment: Is there a manual to understand STAR output files?
3.0 years ago by ev97 ▴ 20
2
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4
replies
3.5k
views
Is there a manual to understand STAR output files?
STAR RNAseq alignment
3.0 years ago by ev97 ▴ 20
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