This is a test version of Biostars. For the public version, visit https://www.biostars.org.
What do you usually use for QC using DNBseq?

I am used to analyse Illumina data and I recently got data from DNBseq... I have run FastQC but I am wondering if it is a good choice for this type of data... since this tool has been created for Illumina (or at least, it is what I have seen till now).

Does anybody use another tool for quality control for DNBseq data?

Any feedback will be really appreciated.

Thanks in advance

Regards

dnbseq fastqc qc illumina rna-seq
• 1,239 views • link
updated by GenoMax GenoMax • written by ev97 • ev97

If this is complete genomics data then there should be nothing special about it. FastQC should still be fine.

• 0 views • link
written by GenoMax GenoMax

Sorry I forgot to mention that I was working with RNA-seq data. Would it be still fine?

(Cause complete genomics data =whole genome sequencing, right?) **Thanks very much for your reply!!!

• 0 views • link
written by ev97 • ev97

Type of data should not matter. AFAIK DNBSeq data is still sanger encoded.

• 0 views • link
written by GenoMax GenoMax

0 answers

No answers yet.

Log in to answer this question.

More posts like this