What do you usually use for QC using DNBseq?

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4 months ago

ev97 ▴ 20

I am used to analyse Illumina data and I recently got data from DNBseq... I have run FastQC but I am wondering if it is a good choice for this type of data... since this tool has been created for Illumina (or at least, it is what I have seen till now).

Does anybody use another tool for quality control for DNBseq data?

Any feedback will be really appreciated.

Thanks in advance

Regards

DNBseq fastqc qc Illumina RNA-seq • 386 views

ADD COMMENT • link updated 4 months ago by GenoMax 142k • written 4 months ago by ev97 ▴ 20

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If this is complete genomics data then there should be nothing special about it. FastQC should still be fine.

ADD REPLY • link 4 months ago by GenoMax 142k

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Sorry I forgot to mention that I was working with RNA-seq data. Would it be still fine?

(Cause complete genomics data =whole genome sequencing, right?) **Thanks very much for your reply!!!

ADD REPLY • link 4 months ago by ev97 ▴ 20

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Type of data should not matter. AFAIK DNBSeq data is still sanger encoded.

ADD REPLY • link 4 months ago by GenoMax 142k

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