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questions
3
votes
5
replies
448
views
Tutorial for analyzing WGBS data
NGS
methylseq
WGBS
7 weeks ago by
pt.taklifi
▴ 60
1
vote
1
reply
211
views
is there a tool to recover corrupted fastq files
fastq
short-read
updated 10 weeks ago by
Ram
43k • written 10 weeks ago by
pt.taklifi
▴ 60
0
votes
2
replies
883
views
are there any downloadable database for tissue specific DMRs?
t-DMR
updated 2.6 years ago by
yupeng he
▴ 80 • written 2.8 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
727
views
annotating regions with annotate Peak and ucsc refGene gives different answers in some cases
gene_names
r
ngs
annotate
2.8 years ago by
pt.taklifi
▴ 60
1
vote
4
replies
986
views
gene expression for a specific gene across for multiple cancer types in TCGA datasets
gene_expression
TCGA
RTCAG
2.9 years ago by
pt.taklifi
▴ 60
1
vote
3
replies
1.3k
views
ATACseq batch effect coupled with biological effect
batch-effect
ATAC-seq
updated 11 months ago by
Ram
43k • written 3.0 years ago by
pt.taklifi
▴ 60
7
votes
5
replies
5.2k
views
How to create SAF from text file for FeatureCounts
featureCounts
ATAC-seq
updated 11 months ago by
Ram
43k • written 3.0 years ago by
pt.taklifi
▴ 60
2
votes
2
replies
2.8k
views
get count matrix from bam files
bam
ATAC-seq
updated 11 months ago by
Ram
43k • written 3.0 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
1.5k
views
how to get feature importance after SVM
high_dimensional
SVM
R
3.0 years ago by
pt.taklifi
▴ 60
1
vote
2
replies
1.3k
views
How to implement k fold cv after randomForest
k_fold_cv
R
randomForest
3.1 years ago by
pt.taklifi
▴ 60
2
votes
3
replies
725
views
How to remove repeats on galaxy
alignment
repeats
galaxy
updated 3.1 years ago by
Biostar
20 • written 3.3 years ago by
pt.taklifi
▴ 60
1
vote
1
reply
768
views
how to determine low quality variants in vcf files
vcf
variant_depth
3.2 years ago by
pt.taklifi
▴ 60
1
vote
9
replies
2.9k
views
Merge bigwig Files with different intervals
bigwig
Merge
3.2 years ago by
pt.taklifi
▴ 60
2
votes
1
reply
1.9k
views
bedGraphToBigWig error : Expecting at least 3 words line 1 of chrom.sizes. got 2
bigwig
bedGraph
updated 3.2 years ago by
ATpoint
82k • written 3.2 years ago by
pt.taklifi
▴ 60
4
votes
6
replies
7.5k
views
how to remove duplicates with picard
alignment
deduplication
updated 3.2 years ago by
Pierre Lindenbaum
161k • written 3.2 years ago by
pt.taklifi
▴ 60
2
votes
1
reply
1.0k
views
samtools index error
alignment
updated 3.2 years ago by
Pierre Lindenbaum
161k • written 3.2 years ago by
pt.taklifi
▴ 60
8
votes
3
replies
900
views
how to select features for high dimension data?
machine-learning
updated 5 months ago by
Ram
43k • written 3.2 years ago by
pt.taklifi
▴ 60
7
votes
6
replies
1.8k
views
nohup with while loop
bash
loop
SRAtoolkit
3.2 years ago by
pt.taklifi
▴ 60
2
votes
6
replies
901
views
error with bowtie2 alignment
alignment
error
sequencing
3.2 years ago by
pt.taklifi
▴ 60
4
votes
5
replies
700
views
sum of values in a column
r
3.3 years ago by
pt.taklifi
▴ 60
3
votes
3
replies
1.4k
views
remove mitochondrial reads using Bowtie2
alignment
updated 3.3 years ago by
Antonio R. Franco
★ 5.1k • written 3.3 years ago by
pt.taklifi
▴ 60
0
votes
5
replies
1.3k
views
bigwigs to reads in peaks
R
atac-seq
updated 11 months ago by
Ram
43k • written 3.3 years ago by
pt.taklifi
▴ 60
3
votes
7
replies
5.0k
views
how to resolve "command not found " error on macOS
command_line
macOs
installation
3.3 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
452
views
matched tumor and cfDNA data sets
variant_calls
sequencing
3.4 years ago by
pt.taklifi
▴ 60
2
votes
6
replies
1.2k
views
overlap regions within a file
overlap
R
ATAC_seq
3.4 years ago by
pt.taklifi
▴ 60
2
votes
3
replies
1.2k
views
whole blood ATAC seq
ATAC_seq
whole_blood
dataset
3.4 years ago by
pt.taklifi
▴ 60
3
votes
1
reply
754
views
overlap snp with regions in R
snp
overlap
updated 3.4 years ago by
rpolicastro
13k • written 3.4 years ago by
pt.taklifi
▴ 60
0
votes
0
replies
436
views
how to annotate variants to human reference genome in R
R
annotation
reference_genome
3.4 years ago by
pt.taklifi
▴ 60
2
votes
5
replies
961
views
how to normalize GC content using cqn function
cqn
software error
3.4 years ago by
pt.taklifi
▴ 60
18
votes
3
replies
3.8k
views
how to get GC content of multiple ranges in R
R
sequence
3.4 years ago by
pt.taklifi
▴ 60
1
vote
2
replies
634
views
calculating overlaps with Peak calls for each exon
R
overlap
bioconductor
exon
3.5 years ago by
pt.taklifi
▴ 60
31 results • Page
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